Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d04
         (815 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative odorant-b...    25   2.8  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   6.4  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   8.5  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   8.5  

>AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative
           odorant-binding protein OBPjj17 protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 336 RCGLFRVNQQITD 374
           RCGLF++N  +TD
Sbjct: 93  RCGLFKINMTMTD 105


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 236 ITTRNREESIAICDVLANDENHHFYSNSLREIS 334
           ITT  +E    I   LA DE   +Y N L  +S
Sbjct: 339 ITTSKKEHFDEILRGLAEDETGQWYRNVLSRLS 371


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -1

Query: 809 HIFQVISSN-KSTVELKWKE-LSKNHNVFYAYHGNRLENFYTILNFGL 672
           HI QVI    KS  E    E   K HNV    +G+   NF+  + F L
Sbjct: 2   HIKQVIIQGFKSYREQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVL 49


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 137 QYNRIMDLELDAFDSLTGLDCL 72
           QYNRI  +    FD L GL  L
Sbjct: 872 QYNRIASIANHTFDHLHGLKIL 893


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 884,057
Number of Sequences: 2352
Number of extensions: 19217
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)