Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d04
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003134-5|AAB54139.1|  357|Caenorhabditis elegans Nek (never in...    30   1.7  
Z47075-6|CAA87379.1|  538|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF500111-1|AAM27196.1|  538|Caenorhabditis elegans poly ADP-ribo...    29   3.0  
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   4.0  
AL031629-1|CAA20974.1|  287|Caenorhabditis elegans Hypothetical ...    28   9.2  

>AF003134-5|AAB54139.1|  357|Caenorhabditis elegans Nek (never in
           mitosis kinase) likeprotein 2 protein.
          Length = 357

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 713 NRLENFYTILNFGLQQHLNK----NTSLGNGVYLSPELSATIPHSHGGFGWGASCI 558
           NR +    + +FG+ + L      +T +G   YLSPE+  + P++     W   C+
Sbjct: 146 NRRKTVLKLSDFGISKELGTKSAASTVIGTPNYLSPEICESRPYNQKSDMWSLGCV 201


>Z47075-6|CAA87379.1|  538|Caenorhabditis elegans Hypothetical
           protein E02H1.4 protein.
          Length = 538

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 722 YHGNRLENFYTILNFGLQQHLNKNTSL--GNGVYLS 621
           +HG R+ N ++IL  GLQ  +     L  GNGVY +
Sbjct: 385 WHGTRVTNVFSILMNGLQFPVGDRCGLMFGNGVYFA 420


>AF500111-1|AAM27196.1|  538|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-2 protein.
          Length = 538

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 722 YHGNRLENFYTILNFGLQQHLNKNTSL--GNGVYLS 621
           +HG R+ N ++IL  GLQ  +     L  GNGVY +
Sbjct: 385 WHGTRVTNVFSILMNGLQFPVGDRCGLMFGNGVYFA 420


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
           protein Y39F10A.3 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = -1

Query: 806 IFQVISSNKSTVELKWKELSKNHNVFYAY-----HGNRLENFYTILNFGLQQHLNKNTSL 642
           +F +  +N    E +W++L+KN N+ Y +         L+++  I    ++  ++  TS+
Sbjct: 140 LFSLGLNNYINFEEEWQKLNKNRNILYGFDVDTQKDETLQSYSQIRGTAMKAKISPETSI 199

Query: 641 GNGVYLSPELS 609
               Y   +L+
Sbjct: 200 ALSAYTISDLA 210


>AL031629-1|CAA20974.1|  287|Caenorhabditis elegans Hypothetical
           protein Y106G6D.1 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 446 SFHLYKVHHLHWRLAFGN*SLRVHQPLRTRLHKISDLRYNSP 571
           SF    VH L WR    + + RVH  L  R+ ++   R + P
Sbjct: 245 SFPASNVHELEWRYIMKSLNQRVHHKLYQRITRMPGDRNDKP 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,499,116
Number of Sequences: 27780
Number of extensions: 438050
Number of successful extensions: 1041
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)