Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d04
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    26   0.48 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.48 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   5.9  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 318 PCVKSQRCGLFRVNQ 362
           PC K+Q+C + R+N+
Sbjct: 54  PCTKNQQCSILRINR 68


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 318 PCVKSQRCGLFRVNQ 362
           PC K+Q+C + R+N+
Sbjct: 103 PCTKNQQCSILRINR 117


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +2

Query: 635  HYPAKYSCSNAVVSQN*ESYKSSPNDFRDTHKIHYDFWTV 754
            H P  YSC    V Q  +   SSP      +  + D  TV
Sbjct: 1267 HAPPAYSCGTVSVPQQQQLPPSSPQPRLTVNHAYRDAVTV 1306


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 425 HLLAYDQSFHLYKVHHLHWRLAF 493
           H +AY +      +HH HW L +
Sbjct: 194 HRVAYWREDIGINLHHWHWHLVY 216


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 569 PPIRSLHDCEVLSHL 613
           PPIR + DC   S L
Sbjct: 418 PPIRKISDCSTTSSL 432


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 728 YAYHGNRLENFYTILNFGLQQHL 660
           Y  +GN + NF     F L+QH+
Sbjct: 156 YQMNGNNITNFKNSNIFQLKQHM 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,050
Number of Sequences: 438
Number of extensions: 5503
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)