Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d03
         (270 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    20   2.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   4.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   4.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   4.1  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    19   9.5  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    19   9.5  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 19.8 bits (39), Expect(2) = 2.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 173 DCRPICGPASPLL 135
           D   +CGP +PL+
Sbjct: 375 DFHGLCGPKNPLI 387



 Score = 19.0 bits (37), Expect(2) = 2.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 104 CYPVNPCINI 75
           C P NP INI
Sbjct: 380 CGPKNPLINI 389


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +2

Query: 131 GKGAEMQVHRSDDNPEVNRL 190
           G+    + +RSD+ P++  L
Sbjct: 269 GRDENPRTYRSDEGPQITEL 288


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +2

Query: 59  ECNSCIC*CKDLQDSTVVLVARCSGKGAEMQVHRSDDNP 175
           EC    C    ++   VV   +C+ K  E +  +  D P
Sbjct: 242 ECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKEKDKP 280


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 141 APLPEQRATNTTVLSCK 91
           +P P+QR+ + T LS K
Sbjct: 696 SPSPQQRSPSVTDLSTK 712


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 146 MQVHRSDDNPEVNRLVDN 199
           +Q+  +  +P+V  L+DN
Sbjct: 443 IQIWTTGSDPQVRNLLDN 460


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 45  QWTISIVNLKMVRNT 1
           QW   I NLK+V  T
Sbjct: 91  QWAQLIQNLKVVATT 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,578
Number of Sequences: 336
Number of extensions: 1284
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4485306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)