Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d01
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0364 + 2615056-2615239,2615573-2615637,2616016-2616103,261...    33   0.27 
02_01_0359 + 2578038-2578221,2578555-2578619,2583179-2583266,258...    33   0.27 
04_04_0505 + 25719959-25720052,25721548-25722266                       30   2.5  
02_01_0736 - 5490671-5491813                                           30   2.5  
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411           30   2.5  
03_05_0145 + 21254448-21255488                                         29   3.3  
03_02_0091 + 5574528-5577254                                           29   4.4  
01_06_0216 + 27618116-27618548,27618960-27619042,27619169-276192...    29   4.4  
01_01_0594 + 4420381-4421898                                           29   4.4  
11_01_0611 - 4894342-4895448                                           29   5.8  
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307...    28   7.6  
04_04_1548 - 34313212-34313304,34313518-34313632,34314097-343142...    28   7.6  

>02_01_0364 +
           2615056-2615239,2615573-2615637,2616016-2616103,
           2616202-2616269,2616653-2616703,2617168-2617285,
           2617463-2617509,2617603-2617629,2617806-2617881,
           2618157-2618296,2618623-2618721
          Length = 320

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -1

Query: 201 PLCAPSQLARARGLADPAALSAHLQNQEGSSSGRAEVSGSTGGNRFIVCELKGIVLGTSA 22
           PL  P ++ R++ L +    S  L    G+  GR  +S S  GN+ ++ +LKG +  ++ 
Sbjct: 141 PLIIPDKIQRSKALIECDGDSIDLSGDVGAV-GRIIISNSPNGNQELLLDLKGTIYKSTI 199

Query: 21  NTSEKCC 1
             S   C
Sbjct: 200 VPSRTFC 206


>02_01_0359 +
           2578038-2578221,2578555-2578619,2583179-2583266,
           2583365-2583432,2583816-2583866,2584331-2584448,
           2584626-2584672,2584766-2584792,2584969-2585044,
           2585320-2585483
          Length = 295

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -1

Query: 201 PLCAPSQLARARGLADPAALSAHLQNQEGSSSGRAEVSGSTGGNRFIVCELKGIVLGTSA 22
           PL  P ++ R++ L +    S  L    G+  GR  +S S  GN+ ++ +LKG +  ++ 
Sbjct: 141 PLIIPDKIQRSKALIECDGDSIDLSGDVGAV-GRIIISNSPNGNQELLLDLKGTIYKSTI 199

Query: 21  NTSEKCC 1
             S   C
Sbjct: 200 VPSRTFC 206


>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -3

Query: 562 AVPALVLNRVHRPVRRVCDAPRPARHTSHDSVTLI*CHNGSHLATLR 422
           A P     R+    RR  D PRPAR   H +VTL   H  S    +R
Sbjct: 79  ATPPKSYGRLLGRRRRHRDLPRPARGVDHPAVTLRGLHPSSETGDIR 125


>02_01_0736 - 5490671-5491813
          Length = 380

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = -1

Query: 240 GCSGEPTCLALPDPLCAPSQLARARGLADPAAL 142
           GCS E    ALPDP+C P  L+ A  LA P  L
Sbjct: 180 GCSWE----ALPDPICFPCVLSPAGYLAPPLIL 208


>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
          Length = 885

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 146 AAGSARPLARAN*LGAHKGSGNARQVGSPLQPVR 247
           AAGSAR L   +   AH GSG  R++   + P R
Sbjct: 366 AAGSARELMSGSRRAAHHGSGQRRELMGTITPQR 399


>03_05_0145 + 21254448-21255488
          Length = 346

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 411 KKSADGNSGAEEGGSKKKDENENQLKRTKS 322
           K+S +GN GA  GG+ K+D  E   +R  S
Sbjct: 218 KRSLNGNGGAYGGGAAKRDPGERSGRRPDS 247


>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 718 ILLQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFNKVRFA 569
           + L   V  AALW   ++  A  R  VC G +S     K   FF + R A
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFERARDA 530


>01_06_0216 +
           27618116-27618548,27618960-27619042,27619169-27619225,
           27619255-27619407,27619777-27619872,27620103-27620183,
           27620184-27620254,27620343-27620385,27620502-27620582,
           27620684-27620743,27621018-27621083,27621358-27621455,
           27621794-27621842,27621933-27621977,27622845-27623369
          Length = 646

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 437 PRNTTVLEKKSRPMETAERRRVAPKKRMKTKIS*RELKAVNCEVG 303
           PRNT    + +RP  T +R+   PK+R + K         N E G
Sbjct: 556 PRNTRSSSEDTRPSPTQKRKSSKPKQRSRKKAKADSSSGNNAENG 600


>01_01_0594 + 4420381-4421898
          Length = 505

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = +2

Query: 53  SQTINLFPPV--EPETSARPDELPS 121
           S+++ L+PPV  E + +ARPD LPS
Sbjct: 366 SESLRLYPPVPFEHKAAARPDTLPS 390


>11_01_0611 - 4894342-4895448
          Length = 368

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 387 GAEE--GGSKKKDENENQLKRTKSRELRGGIMYYSC 286
           G EE   G ++++++  +L RT+S ELR G+  + C
Sbjct: 305 GEEETKNGKQEQEDDHVELLRTRSGELREGVEMFDC 340


>12_02_0280 -
           16729000-16729678,16729948-16730039,16730072-16730772,
           16731033-16731144,16731961-16731970,16732954-16733663
          Length = 767

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 705 HVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSTRFDSLP 565
           HV S +PY    I RLR+SAP    +  +A W+    +      ++P
Sbjct: 555 HVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWMVHRLIIRKSIHTVP 601


>04_04_1548 -
           34313212-34313304,34313518-34313632,34314097-34314287,
           34314391-34315379,34315989-34316136,34316349-34316424,
           34316946-34317110,34317196-34317286,34318069-34318153,
           34318256-34318411,34318479-34318586,34318713-34318811,
           34318927-34319036,34319139-34319208
          Length = 831

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 225 PTCLALPDPLCAPSQLARARGLADPAALSAHLQNQEGSSS 106
           PT   LP P   PS L    G +DP A S+       S +
Sbjct: 517 PTSAVLPSPTSLPSHLREKFGFSDPNANSSSFITSSSSDN 556


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,910,440
Number of Sequences: 37544
Number of extensions: 504515
Number of successful extensions: 1680
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)