Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d01
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    32   0.56 
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    32   0.56 
Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical p...    31   0.73 
U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical...    29   3.9  

>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical
           protein F43D9.1 protein.
          Length = 1226

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 440 PPRNTTVLEKKSRPMETAERRRVAPKKRMKTKIS*RELKAVNCEVG 303
           PP  TT L+++ R  E A  RR+  + +M T +   +L  V   VG
Sbjct: 133 PPSTTTTLDRRDRKAEKALVRRITNEMQMATYVQQIDLSTVKQPVG 178


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical
           protein F43D9.1 protein.
          Length = 1226

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 440 PPRNTTVLEKKSRPMETAERRRVAPKKRMKTKIS*RELKAVNCEVG 303
           PP  TT L+++ R  E A  RR+  + +M T +   +L  V   VG
Sbjct: 133 PPSTTTTLDRRDRKAEKALVRRITNEMQMATYVQQIDLSTVKQPVG 178


>Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical
           protein C36H8.1 protein.
          Length = 418

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +2

Query: 77  PVEPETSARPDELPS*FCKCADSAAGSAR 163
           PVEP   A P +LPS    C D A GS R
Sbjct: 235 PVEPSDPAPPSKLPSPSKSCTDLAGGSQR 263


>Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical
           protein R107.4d protein.
          Length = 817

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 420 FRKKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 307
           F+KK+  +GN G +    +   ENE Q KR K R+  G
Sbjct: 777 FKKKRRENGNEGGDNDVCRICCENERQEKREKKRKSSG 814


>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -1

Query: 408 KSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 307
           +S DG+ G EEG S KK++  N LKR    E  G
Sbjct: 110 QSRDGDEGEEEG-SDKKEKKGNPLKREHGDEGEG 142


>AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical
           protein Y56A3A.31 protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -2

Query: 107 LVGLKSPAPLAGTGLLSAN*KASSSEP 27
           L G +S APLAG+G+L++N  A SS P
Sbjct: 6   LGGAESAAPLAGSGVLASN-SAGSSPP 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,576,670
Number of Sequences: 27780
Number of extensions: 396849
Number of successful extensions: 1194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)