Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c24
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 33 0.36
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 33 0.36
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 30 2.6
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863... 30 2.6
10_02_0042 + 4493692-4494019,4494428-4494441 29 3.4
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 28 7.8
09_04_0142 + 15039745-15040538,15041094-15041218,15041842-150421... 28 7.8
08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819 28 7.8
06_03_0178 + 17594062-17595576 28 7.8
03_06_0688 - 35559239-35559433,35560455-35560792,35561357-355617... 28 7.8
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -1
Query: 463 RGGRFTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 284
R GR + + + + +P DD+T P P T + + + +YP ++ L
Sbjct: 354 RAGRIEGRSGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLP 413
Query: 283 STSRVM 266
S SR+M
Sbjct: 414 SLSRLM 419
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -1
Query: 463 RGGRFTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 284
R GR + + + + +P DD+T P P T + + + +YP ++ L
Sbjct: 324 RAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLP 383
Query: 283 STSRVM 266
S SR+M
Sbjct: 384 SLSRLM 389
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +3
Query: 594 SRPPGHAPRGAHPS----GRIPGTPGSPARTPA 680
S PP PR A PS G +PG P SP+ +PA
Sbjct: 14 SPPPRKRPRDASPSEEEEGGLPGGPPSPSPSPA 46
>08_02_1577 +
27985066-27985434,27985520-27985594,27986159-27986320,
27986415-27986590,27986681-27986756,27987154-27987282,
27987363-27987482,27987734-27987815,27988016-27988110,
27988427-27988491,27988604-27988802,27989426-27989620,
27989866-27989960,27990059-27990194,27990265-27990482,
27990729-27990856,27991148-27991617
Length = 929
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = -1
Query: 409 YVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLDSTSRVMDPNIIGAEHYGI 230
Y D L DP P TT H++ L + P P+ T +++ I +
Sbjct: 598 YRITDSLADP-PDTTQKHVEELVRLPESFLCYSPSPEAGPVCPTPAILNGFITFGSFNNL 656
Query: 229 ARGVQKILQAW 197
A+ K+LQ W
Sbjct: 657 AKITPKVLQVW 667
>10_02_0042 + 4493692-4494019,4494428-4494441
Length = 113
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 541 TVSPGPPRLGSAQPRSPGQGHPGTRP 618
T P PPR P SP +GHP P
Sbjct: 45 TAPPSPPRCRRRAPLSPPRGHPPLAP 70
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 600 PPGHAPRGAHPSGRIPGTPGSPARTP 677
PPGH P G G PG P P P
Sbjct: 280 PPGHPPDGMWHRGAAPGGPYRPLGPP 305
>09_04_0142 +
15039745-15040538,15041094-15041218,15041842-15042137,
15042267-15042554,15042834-15043193
Length = 620
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 46 GDHVLYGAHHVEGSFRNVIHL 108
G+HVL G HV G RN+I L
Sbjct: 524 GEHVLQGVRHVPGLKRNLISL 544
>08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819
Length = 334
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 606 GHAPRG--AHPSGRIPGTPGSPARTPAKITSR 695
G+ P+G A+ SGRIPG P S IT+R
Sbjct: 70 GYRPQGVPANESGRIPGQPDSSIENFKAITTR 101
>06_03_0178 + 17594062-17595576
Length = 504
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 597 RPPGHAPRGAHPSGRIPGTPGSPARTPAKITSRNS 701
R PGH+PR PS P TP + TP+ ++ S
Sbjct: 3 RSPGHSPRHLSPS-PAPSTPRPSSPTPSSASASAS 36
>03_06_0688 -
35559239-35559433,35560455-35560792,35561357-35561785,
35562014-35562110,35562314-35562438,35562758-35562908
Length = 444
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 168 DSQSQEDTEVPFAADPDFRREMDHIPEAAF 79
D QSQ+ T ADPD E+D+ AF
Sbjct: 202 DEQSQDSTSTDGCADPDETVELDYFDPYAF 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,279,002
Number of Sequences: 37544
Number of extensions: 448229
Number of successful extensions: 1810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1810
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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