Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c24
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   180   1e-45
Z81487-3|CAB03997.2|  345|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    31   0.76 
Z81116-10|CAB03307.1|  321|Caenorhabditis elegans Hypothetical p...    31   1.3  
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    30   2.3  
AF026209-8|AAB71275.2|  328|Caenorhabditis elegans Seven tm rece...    29   3.1  
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z50176-4|CAA90541.1|  546|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   7.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   7.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   7.1  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    28   9.3  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    28   9.3  
AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical ...    28   9.3  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  180 bits (437), Expect = 1e-45
 Identities = 95/150 (63%), Positives = 113/150 (75%), Gaps = 14/150 (9%)
 Frame = -1

Query: 598 LDRVTLAEHFRDEEGQDLLLFIDNIFRFTQAGSEV-----RTRSSYQFE-----GRGGR- 452
           L  +T+AE+FRD+EGQD+LLFIDNIFRFTQAGSEV     R  S+  ++       G   
Sbjct: 293 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQ 352

Query: 451 ---FTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLDS 281
               T K    ++++A+YVPADDLTDPAPATTFAHLDATTVLS  IAEL +YPAVDPLDS
Sbjct: 353 ERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLDS 412

Query: 280 TSRVMDPNIIGAEHYGIARGVQKILQAWKS 191
           TSR+MDPN++G  HY IARGVQKILQ +KS
Sbjct: 413 TSRIMDPNVVGQNHYDIARGVQKILQDYKS 442



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/29 (65%), Positives = 25/29 (86%)
 Frame = -3

Query: 203 GMEELSEDDQPEIARARKIQRFPSQPIQI 117
           GM+ELSE+D+  ++RARKIQRF SQP Q+
Sbjct: 451 GMDELSEEDKLTVSRARKIQRFLSQPFQV 479



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -2

Query: 660 TRASLVYGQKDEPHGARARVALTG 589
           ++ SLVYGQ +EP GARARV LTG
Sbjct: 272 SKVSLVYGQMNEPPGARARVCLTG 295



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/29 (58%), Positives = 23/29 (79%)
 Frame = -2

Query: 108 EMDHIPEAAFYMVGTIEDVIAKLSQELSK 22
           E+DH+PE AFYM G I+DV  K ++EL+K
Sbjct: 507 ELDHLPEVAFYMQGGIDDVFKK-AEELAK 534


>Z81487-3|CAB03997.2|  345|Caenorhabditis elegans Hypothetical
           protein C54E10.4 protein.
          Length = 345

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +2

Query: 653 ARVSSSYSGEDYFEELLIIAAHIYIF 730
           A+++  YSG+ YFE+LL++  HI+ F
Sbjct: 121 AQINQDYSGKMYFEKLLLVLTHIFPF 146


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -1

Query: 463 RGGRFTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 284
           R GR   +    + +  + +P +D+T P P  T    +    +   + +  +YP +D L 
Sbjct: 329 RAGRVKGREGSITQIPILTMPNNDITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLP 388

Query: 283 STSRVM 266
           S SR+M
Sbjct: 389 SLSRLM 394


>Z81116-10|CAB03307.1|  321|Caenorhabditis elegans Hypothetical
           protein T06C12.11 protein.
          Length = 321

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 147 YLPGSGYLWLVIFGQLFHAC-SIFCT 221
           Y PG GY+ + IFG  F  C SI CT
Sbjct: 80  YTPGFGYVLICIFGASFGLCISILCT 105


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -1

Query: 463 RGGRFTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 284
           R GR   +    + +  + +P DD+T P P  T    +    +   +    +YP ++ L 
Sbjct: 317 RAGRVEGRDGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLP 376

Query: 283 STSRVM 266
           S SR+M
Sbjct: 377 SLSRLM 382


>AF026209-8|AAB71275.2|  328|Caenorhabditis elegans Seven tm
           receptor protein 134 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 147 YLPGSGYLWLVIFGQLFHAC-SIFCT 221
           Y PG GY+ + IFG  F  C S+ CT
Sbjct: 80  YTPGFGYVLVCIFGASFGLCISLLCT 105


>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
           protein T13F2.3b protein.
          Length = 1076

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 582 KVTRSRPPGHAPRGAHPSGRIPG--TPGSPARTPA 680
           +    R P   P GA+P G +PG  TPG PA+ PA
Sbjct: 256 RAAAQRVPVPYPPGAYPPG-MPGPMTPGYPAQAPA 289


>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
           protein T13F2.3a protein.
          Length = 1074

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 582 KVTRSRPPGHAPRGAHPSGRIPG--TPGSPARTPA 680
           +    R P   P GA+P G +PG  TPG PA+ PA
Sbjct: 254 RAAAQRVPVPYPPGAYPPG-MPGPMTPGYPAQAPA 287


>Z50176-4|CAA90541.1|  546|Caenorhabditis elegans Hypothetical
           protein C09G1.4 protein.
          Length = 546

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 538 TTVSPGPPRLGSAQPRSPGQGHPGTRPVGLILLAVYQ 648
           TT  P PP +G + P    QG  GT+ V   L+A+ Q
Sbjct: 417 TTTGPPPPAMGLSVPVQYDQGEYGTQSVRAQLVALDQ 453


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 594 SRPPGHAPRGAHPSGRIPGTPGSPARTP 677
           S PPG       P+ R PG PG P R P
Sbjct: 241 SDPPGPPGPPGPPTRRPPGPPGPPTRRP 268



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +3

Query: 597 RPPGHAPRGAHPSGRIPGTPGSPARTP 677
           RPPG  P G  P+ R PG PG P R P
Sbjct: 256 RPPG--PPGP-PTRRPPGPPGPPTRRP 279


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 547 SPGPPRLGSAQPRSPGQGHPGT 612
           SP PPR GS  P  P +G P T
Sbjct: 288 SPPPPRAGSPPPPPPPRGSPPT 309


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 547 SPGPPRLGSAQPRSPGQGHPGT 612
           SP PPR GS  P  P +G P T
Sbjct: 309 SPPPPRAGSPPPPPPPRGSPPT 330


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 547 SPGPPRLGSAQPRSPGQGHPGT 612
           SP PPR GS  P  P +G P T
Sbjct: 294 SPPPPRAGSPPPPPPPRGSPPT 315


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 600 PPGHA-PRG-AHPSGRIPGTPGSPARTPA 680
           PPG A P G A P G  PG PG+P  TP+
Sbjct: 170 PPGPAGPAGNAGPPGA-PGGPGAPGNTPS 197


>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 670 RAGDPGVPGIRPEG*APRGACPGGL 596
           + G PG PG+ P G  P G  P G+
Sbjct: 572 QGGQPGHPGMMPPGMMPPGMMPPGM 596



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 600 PPGHAPRGAHPSGRIPGTPGSPARTP 677
           PPG  P G  P G  PG  G P   P
Sbjct: 588 PPGMMPPGMMPPGMHPGMAGMPPMHP 613


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
           protein Y54G2A.21 protein.
          Length = 967

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  PVTTWRSRPLWCPPCRRQLPECDPSRA 113
           P+T  RS PL  PP   QLP+C  S A
Sbjct: 892 PIT--RSHPLVAPPVSYQLPKCSNSLA 916


>AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.5 protein.
          Length = 994

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  PVTTWRSRPLWCPPCRRQLPECDPSRA 113
           P+T  RS PL  PP   QLP+C  S A
Sbjct: 426 PIT--RSHPLVAPPVSYQLPKCSNSLA 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,999,209
Number of Sequences: 27780
Number of extensions: 348078
Number of successful extensions: 1438
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)