Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c23
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0239 + 13384451-13387124,13387234-13387631                       30   2.4  
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134...    29   4.2  
01_01_0978 + 7738232-7740848,7740929-7741320                           28   9.7  

>06_02_0239 + 13384451-13387124,13387234-13387631
          Length = 1023

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 725 TYRIIILFLVTXKGPVDPQTGMVMNI 648
           +Y +++L ++T K PVDPQ G  MN+
Sbjct: 907 SYGMLLLEMITGKRPVDPQFGGDMNL 932


>04_01_0126 -
           1340540-1341376,1341437-1341900,1342105-1342156,
           1342225-1342799,1343596-1343703,1345823-1346155,
           1346783-1349306
          Length = 1630

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 725 TYRIIILFLVTXKGPVDPQTGMVMNIXDLKKYIKTAILEPLD 600
           +Y I++L ++T K PVD   G  MN   L+K+++ +I    D
Sbjct: 857 SYGIMLLEMITGKSPVDQMFGGEMN---LEKWVRASIPHQAD 895


>01_01_0978 + 7738232-7740848,7740929-7741320
          Length = 1002

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -3

Query: 725  TYRIIILFLVTXKGPVDPQTGMVMNIXDLKKYIKTAILEPLDHXNLDNDVPY-FKTXAST 549
            ++ +++L LVT K PVDP+ G      DL K++ + I +      LD+ +   FK   + 
Sbjct: 888  SFGVVLLELVTGKPPVDPEFGE----KDLVKWVCSTIDQKGVEHVLDSKLDMTFKDEINR 943

Query: 548  XENVAI 531
              N+A+
Sbjct: 944  VLNIAL 949


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,632,041
Number of Sequences: 37544
Number of extensions: 198553
Number of successful extensions: 285
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)