Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c22
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.0  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   7.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 113 LDANKFTYLIKVISFGSVH 169
           LD NKF  +IK+ + GS +
Sbjct: 828 LDQNKFKDIIKIKTIGSTY 846


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 610 VPVPLRVGTFPS 645
           VPVP+  G FPS
Sbjct: 123 VPVPIYCGNFPS 134


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 610 VPVPLRVGTFPS 645
           VPVP+  G FPS
Sbjct: 123 VPVPIYCGNFPS 134


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 610 VPVPLRVGTFPS 645
           VPVP+  G FPS
Sbjct: 123 VPVPIYCGNFPS 134


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 610 VPVPLRVGTFPS 645
           VPVP+  G FPS
Sbjct: 123 VPVPIYCGNFPS 134


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 610 VPVPLRVGTFPS 645
           VPVP+  G FPS
Sbjct: 123 VPVPIYCGNFPS 134


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 610 VPVPLRVGTFPS 645
           VPVP+  G FPS
Sbjct: 123 VPVPIYCGNFPS 134


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 610 VPVPLRVGTFPS 645
           VPVP+  G FPS
Sbjct: 123 VPVPIYCGNFPS 134


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 610 VPVPLRVGTFPS 645
           VPVP+  G FPS
Sbjct: 126 VPVPIYCGNFPS 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,104
Number of Sequences: 438
Number of extensions: 3859
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)