Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c21
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   1.9  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.6  
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    26   4.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   5.9  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   5.9  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   5.9  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   7.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   7.8  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 211 KDICIHNQEAVICILFLHH 267
           KD+  + QE ++C  FLHH
Sbjct: 273 KDLTSYTQEVIVCRKFLHH 291


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -2

Query: 514 LDE--EYIRKNFKLPQRALYLDPYRRPLITFP--MTQEDCKHFNLARKYKINQQILDGYL 347
           LDE   Y+ KNF+  +RAL  +P     +T+P  +     K +      K  +Q+L  YL
Sbjct: 652 LDEAKRYMSKNFQPDKRALLFNPRTANDMTYPPSLFSSLIKEYTSLGDIKEAKQVLSTYL 711

Query: 346 D 344
           +
Sbjct: 712 E 712


>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 340 GESISAPSVFPYMKTKAEKQSEADDDEEII 251
           G+S S   +  ++K+  E     DDD+E+I
Sbjct: 136 GQSASKNKILDFLKSDKENLISGDDDQELI 165


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 384  FLAKLKCLQSSCVIGKVIRGRLYGSKYNALCGNLKFFLMYSSSSNWKSF 530
            F+  + CL S     + +R  L+GS +   CG L      +  + WK +
Sbjct: 1663 FVDTMPCLLSKLEFDEELRIELFGSFWKEYCGELNI----NDPNTWKEY 1707


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 501  YSSSSNWKSF*VVGPADAGRGFVLASEDAPSRGTRQTSGRLD 626
            + S SN+KS    G +  G G +  S     RG+R+  G  D
Sbjct: 917  FGSGSNYKSAPSRGVSHHGHGGMSGSHRGSQRGSRRGGGERD 958


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 445 VYTGPNTTPSVAT*SFS*CTPRRATGNHFEL 537
           V  GP++TP+++  S S   P+   G HF L
Sbjct: 452 VVVGPDSTPTLSFTSGSEGIPKGVKGRHFSL 482


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -2

Query: 679 FCKMTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTKPRPASAGP-TTQNDFQLLDEE 503
           F   T+  T EG+ S  K ++P+V  VP      +A   P+     P T QN ++ L+  
Sbjct: 9   FSSATTQPTTEGNASMRKRTIPVVPSVPERKWDPKA---PKHIQEQPWTMQNWWRHLNWL 65

Query: 502 YIRKNFKLPQRALY 461
           +    F LP  A+Y
Sbjct: 66  HCMLIFGLPMIAIY 79


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 592  DGASSEARTKPRPASAGPTTQNDFQLLDEEYIRKNFKLPQR 470
            + A+ E+    RP S+GP+ QN   L  +E +      P R
Sbjct: 1598 NNAAMESFYSDRPTSSGPSYQNRTPLTGQESMNMGVYSPYR 1638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,581
Number of Sequences: 5004
Number of extensions: 59400
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)