Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c21
(689 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding prote... 24 1.6
AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding pro... 24 1.6
AF388659-3|AAK71993.1| 548|Apis mellifera 1D-myo-inositol-trisp... 23 2.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.7
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 23 3.6
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 4.8
DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly pro... 22 6.3
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 21 8.4
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 8.4
>AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding protein
ASP1 protein.
Length = 144
Score = 23.8 bits (49), Expect = 1.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -2
Query: 349 LDPGESISAPSVFPYMKTKAEKQSEADDD---EEIIYILQLPD 230
+D G ++ PS+ YM E S DD+ +E I + LPD
Sbjct: 59 VDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDEDIMLGLLPD 101
>AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding
protein ASP1 protein.
Length = 144
Score = 23.8 bits (49), Expect = 1.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -2
Query: 349 LDPGESISAPSVFPYMKTKAEKQSEADDD---EEIIYILQLPD 230
+D G ++ PS+ YM E S DD+ +E I + LPD
Sbjct: 59 VDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDEDIMLGLLPD 101
>AF388659-3|AAK71993.1| 548|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
Length = 548
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 15 NFLVYLNKNINHHCDNKSKS-VCL 83
NF+V +N C+NK KS VCL
Sbjct: 95 NFIVDRLRNDLFECENKEKSNVCL 118
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 565 LSWLPKMLHREEPGRPAADST*HRYGGPRKCSSL 666
L WLP +L PG+ T GG R+ +
Sbjct: 300 LQWLPCLLRMSRPGKKITKKT--ILGGNRRAKGM 331
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 565 LSWLPKMLHREEPGRPAADST*HRYGGPRKCSSL 666
L WLP +L PG+ T GG R+ +
Sbjct: 300 LQWLPCLLRMSRPGKKITKKT--ILGGNRRAKGM 331
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 565 LSWLPKMLHREEPGRPAADST*HRYGGPRKCSSL 666
L WLP +L PG+ T GG R+ +
Sbjct: 300 LQWLPCLLRMSRPGKKITKKT--ILGGNRRAKGM 331
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 565 LSWLPKMLHREEPGRPAADST*HRYGGPRKCSSL 666
L WLP +L PG+ T GG R+ +
Sbjct: 300 LQWLPCLLRMSRPGKKITKKT--ILGGNRRAKGM 331
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 565 LSWLPKMLHREEPGRPAADST*HRYGGPRKCSSL 666
L WLP +L PG+ T GG R+ +
Sbjct: 300 LQWLPCLLRMSRPGKKITKKT--ILGGNRRAKGM 331
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 565 LSWLPKMLHREEPGRPAADST*HRYGGPRKCSSL 666
L WLP +L PG+ T GG R+ +
Sbjct: 300 LQWLPCLLRMSRPGKKITKKT--ILGGNRRAKGM 331
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 565 LSWLPKMLHREEPGRPAADST*HRYGGPRKCSSL 666
L WLP +L PG+ T GG R+ +
Sbjct: 368 LQWLPCLLRMSRPGKKITKKT--ILGGNRRAKGM 399
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 565 LSWLPKMLHREEPGRPAADST*HRYGGPRKCSSL 666
L WLP +L PG+ T GG R+ +
Sbjct: 368 LQWLPCLLRMSRPGKKITKKT--ILGGNRRAKGM 399
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -2
Query: 451 YRRPLITFPMTQEDCKHFNLARKYKINQ 368
Y+RP TF D +H++ ++ + N+
Sbjct: 159 YKRPRTTFEPRATDSRHYDRYKEEESNE 186
Score = 22.2 bits (45), Expect = 4.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 513 STRSTSGKTLSCHRGRCIWTRIDV 442
++R SG++ S H G WT+ D+
Sbjct: 393 NSRGHSGQSSSHHHGSKSWTQEDM 416
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.2 bits (45), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 6 YSYNFLVYLNKNINHHCDNKSKSV 77
Y+YN Y N N N++ +N K +
Sbjct: 331 YNYNNNNYNNNNYNNNYNNNCKKL 354
>DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly
protein 9 protein.
Length = 423
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 360 NICWLILYF 386
NI WLILYF
Sbjct: 4 NIWWLILYF 12
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 185 WRSDGLTMQRTFVYIIRKL 241
WR DG T+++ Y+ R +
Sbjct: 232 WRKDGGTVKKKVNYVYRSV 250
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.4 bits (43), Expect = 8.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 586 ASSEARTKPRPASAGPTT 533
A+S T PRPAS+ T
Sbjct: 834 ATSSTSTSPRPASSTAAT 851
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,312
Number of Sequences: 438
Number of extensions: 4579
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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