Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c19
         (807 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q245L9 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_Q05FU8 Cluster: Aspartyl/glutamyl-tRNA amidotransferase...    33   6.4  
UniRef50_Q4BV42 Cluster: Putative uncharacterized protein; n=1; ...    33   8.5  

>UniRef50_Q245L9 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1462

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 533 RYNEHAKIIVEKRTDN*PKKSKYDTFTRLYYFENINKK 420
           R N+ A +I++K     P+KS +  F +L+   N NKK
Sbjct: 865 RNNKKATLIIQKENQKNPRKSNFQNFIQLHILSNTNKK 902


>UniRef50_Q05FU8 Cluster: Aspartyl/glutamyl-tRNA amidotransferase B
           subunit; n=1; Candidatus Carsonella ruddii PV|Rep:
           Aspartyl/glutamyl-tRNA amidotransferase B subunit -
           Carsonella ruddii (strain PV)
          Length = 365

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 30/96 (31%), Positives = 38/96 (39%)
 Frame = +3

Query: 147 FLYFHIYRDKYFTLGTNRITLINYIIMERHLEFN*LAFPTYPFKNRDTTSNILTNIFYYL 326
           F Y   Y   +F    N     N+ + ER L F    +   P KN   T N+  NIF  L
Sbjct: 46  FNYLIKYLIVFFCFNLNSC-FFNFSVFERKLYF----YYDLP-KNYQITQNVFQNIFNLL 99

Query: 327 CRKSVKYNYCRVKTTNTKCAFR*DLSNTQYFFFINI 434
                  NYC  K    K     D ++T+ FF  NI
Sbjct: 100 LN-----NYCEKKILIKKIHLEEDAASTKNFFLKNI 130


>UniRef50_Q4BV42 Cluster: Putative uncharacterized protein; n=1;
           Crocosphaera watsonii WH 8501|Rep: Putative
           uncharacterized protein - Crocosphaera watsonii
          Length = 246

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +1

Query: 397 IYLTLNIFFLLIFSK*YNLVN--VSYFDFFGQLSVRFSTIILACSLYRIFTPKILLSHLT 570
           + +  ++F   I S  Y + N   SY  FF   +++  +I + C L  IF+PKI+ S++T
Sbjct: 23  LVIIFSLFLKFIESLKYTIKNKNASYLRFFFFDNIQLVSICILCELPIIFSPKIINSYVT 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,856,297
Number of Sequences: 1657284
Number of extensions: 13458025
Number of successful extensions: 27596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27590
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)