Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c19
         (807 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   3.8  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   5.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   5.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.7  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 468 LRLLWSVVCSFLYNNFGMFVVSNIH 542
           L L+W  VC+F+   +   VV+ I+
Sbjct: 162 LDLVWREVCTFVVQVYPRLVVNTIN 186


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 735 LFHKYWVCRPVFCSNIFKKH 676
           +F K+WV   +FC ++   H
Sbjct: 1   MFAKFWVNLALFCLHVQHSH 20


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 352 IAGLRQLIQNVHSDKIYLTLNIFFLLI 432
           + G  QL+ N H+   +L  N+ +LL+
Sbjct: 99  LLGNHQLVYNCHTFGRFLAPNLTYLLV 125


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 372 NTKCAFR*DLSNTQYFFFINIFKIVQPCKRI 464
           NT  +    L+N    FF+ +F+    C+R+
Sbjct: 214 NTSTSKEIALNNDVLLFFVKVFRPEPLCERL 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,660
Number of Sequences: 336
Number of extensions: 4251
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)