Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c19
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70212-6|CAA94166.1|  336|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81499-1|CAB04087.1|  471|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical p...    28   9.0  
U39645-3|AAA80362.3|  439|Caenorhabditis elegans Gustatory recep...    28   9.0  
AF387605-1|AAK70488.1|  427|Caenorhabditis elegans putative chem...    28   9.0  
AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine re...    28   9.0  

>Z70212-6|CAA94166.1|  336|Caenorhabditis elegans Hypothetical
           protein R04D3.8 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 399 LSNTQYFFFINIFKIVQPCKRIVLRLLWSVVCSFLYNNFGMF 524
           L+N  Y  F+++F  V  C  ++L+ +W +   F     G+F
Sbjct: 2   LTNEDYLSFLSLFNPVFFCTSVILQTIWLLFIIFHSAKMGIF 43


>Z81499-1|CAB04087.1|  471|Caenorhabditis elegans Hypothetical
           protein F11C3.1 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -2

Query: 761 YFRSFNQYGCSINIGFADPCSVLIFLKSIIKIVSQLDHVLLHIVK 627
           Y   +  Y  S+NI    PC      KSI+KI+S  D  L  I K
Sbjct: 122 YLEKYMYYDFSLNIEIISPCPFPREHKSILKILSNHDVFLEEIDK 166


>Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical
           protein C01G10.3 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 346 IIIAGLRQLIQNVHSDKIYLTLNIFFLLIFSK*YN-LVNVSY 468
           III G+  L+ N     +YL++N FF ++F   +N L+++ +
Sbjct: 97  IIIFGMNLLVYN-EFQSVYLSINRFFAMLFPLRFNWLLSIKF 137


>U39645-3|AAA80362.3|  439|Caenorhabditis elegans Gustatory receptor
           family protein 2 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 753 EF*SIRLFHKYWVCRPVFCSNIF 685
           E+ S  LF+ Y VC P+FC  +F
Sbjct: 287 EYYSFVLFYSYGVCIPIFCFLMF 309


>AF387605-1|AAK70488.1|  427|Caenorhabditis elegans putative
           chemoreceptor GUR-2 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 753 EF*SIRLFHKYWVCRPVFCSNIF 685
           E+ S  LF+ Y VC P+FC  +F
Sbjct: 275 EYYSFVLFYSYGVCIPIFCFLMF 297


>AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine
           receptor, class h protein270 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 397 IYLTLNIFFLLIFSK*YNLVNVSYFDFFGQLSVRFSTIILA 519
           IY+ ++  FLL+ +    L    YF+F+ Q++  F +++LA
Sbjct: 244 IYIQVSAPFLLLSAPVAYLFTTIYFNFYHQVANNFCSLLLA 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,106,522
Number of Sequences: 27780
Number of extensions: 351389
Number of successful extensions: 756
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)