Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c18
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...   110   3e-25
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.30 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    30   0.52 
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    28   1.6  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    28   2.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.8  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    27   4.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   6.4  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   8.5  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    26   8.5  

>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 519

 Score =  110 bits (264), Expect = 3e-25
 Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 2/257 (0%)
 Frame = -1

Query: 872  DIVSAYKQLYTIVKLPAVRKLALVLFTAKLGFCAADAVSGLKLVEAGVPREDXXXXXXXX 693
            +I   +K +   + L  +R+L +V    K+GF A + ++ LK  E G+  E         
Sbjct: 262  NISDMWKTIRAALSLKNMRQLLIVHTLGKVGFVANETLTLLKATEFGLSNEMLSLIILIN 321

Query: 692  XXVQIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTLLGDSGPXXXXXX 513
              + + + V   +  +   PL +WLK +                   ++ +         
Sbjct: 322  FPLGLALGVYTGR-ISNYRPLDIWLKGYWGRVVSILLNTILVY----MVSNWKHRFPVFF 376

Query: 512  XXXXXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAID 333
                 Y  + +     FVA+  F +K+SDP +GGTYMT+LNT+SNLG +WP  + L   D
Sbjct: 377  PIFLCYTLNASFSTIQFVALGVFHSKISDPHIGGTYMTILNTLSNLGGSWPQYVMLRMAD 436

Query: 332  HLTYKSCSLS-KLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGF-LWLQWG 159
             LT  SCS +  LT   CS+  + + C++ GGTC+ + DGYY+ +++ + L   + +   
Sbjct: 437  LLTVSSCSTAPHLT---CSADAQKKECQALGGTCLYKRDGYYLTSIVGIFLAISICVSLI 493

Query: 158  RPTINRLQRLPPSAWQI 108
             P + RL + P S+W I
Sbjct: 494  TPVVRRLTKAPISSWHI 510


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = -1

Query: 359 STLALWAIDHLTYKSCSLSKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIET-----VI 195
           STL LWA  +++   C + +  +N C S + A L +   G      D  Y+ +     + 
Sbjct: 695 STLILWAYGYVSDGRCEMLEPGNNDCKSQLNAYLMQMRTGLSEKAKDHVYVRSKTLPLLK 754

Query: 194 CVILGFLWLQWG 159
           CVI      +WG
Sbjct: 755 CVIDVLCPARWG 766


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +1

Query: 613  AFNQRDSGAGPVVCLAKI-TGIMICTGTKGTASKAKSSRGTPASTSFKPDTASAAQKPSL 789
            AF    S A P +  + I T +   +    + S   SS    +STS     AS++     
Sbjct: 778  AFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSIASSSYTSIP 837

Query: 790  AVNRTKANLRTAGNFTIVYN 849
            +++   ++   A  FT +YN
Sbjct: 838  SISSIASSFFDASGFTSIYN 857


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +1

Query: 637 AGPVVCLAKITGIMICTGTKGTASKAKSSRGTPASTSFKPDTASAAQKPSLAVNRTKANL 816
           AGP +  +        + TK + SK+K    + + TSF  + AS+  KP+ A + TKA L
Sbjct: 360 AGPAMAPSASNKPSASSTTKSSNSKSKKKVTSISGTSFFKNLASST-KPTSASSSTKAPL 418


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/63 (22%), Positives = 31/63 (49%)
 Frame = +1

Query: 640 GPVVCLAKITGIMICTGTKGTASKAKSSRGTPASTSFKPDTASAAQKPSLAVNRTKANLR 819
           G V  ++  +   + +    T+  A S+ G+  +TS+  D+++++   S   +   +N  
Sbjct: 345 GSVATISATSSYDLSSTVSATSGSATSATGSATTTSYSSDSSASSSSSSSHESSAASNGF 404

Query: 820 TAG 828
           TAG
Sbjct: 405 TAG 407


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 537 WTFILLSKHTHVTVCLSSDMPLLYVCGGDGILCKS 433
           W F    K+  V++ L  D+ LL  CGG   L K+
Sbjct: 769 WNFDFRLKNARVSIFLDDDVSLLLDCGGFTTLKKT 803


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 182 GFLWLQWGRPTINRLQRLPPSAWQISR 102
           G + L WG P   RLQ LP  A  + R
Sbjct: 237 GLVILAWGTPAAKRLQGLPLKAHYVLR 263


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 175 KKPRITHITVSM*YPSISVT 234
           +KPRI H+ V+  YP+I +T
Sbjct: 618 EKPRIYHLDVASMYPNIMIT 637


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 685 TGTKGTASKAKSSRGTPASTSFKPDTASAAQKPSLAVNRT 804
           TG+K  +S +  S  T +++S  P TAS     S+  N T
Sbjct: 75  TGSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNST 114


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 187 ITHITVSM*YPSISVTQVPPSDLHNSASTVEEHLLSVNLDSEQLLYVK*SIAQ 345
           ++H++    + ++ VT+ P    H+SA T+ EH  +V  D  + L     + Q
Sbjct: 213 LSHVSHRTMHDALDVTKAPVIFSHSSAYTLTEHERNVRDDVLERLKTNGGVVQ 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,760,310
Number of Sequences: 5004
Number of extensions: 77995
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)