Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c18
(908 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY344834-1|AAR05805.1| 334|Anopheles gambiae ICHIT protein. 27 0.79
AJ010903-1|CAA09389.1| 373|Anopheles gambiae ICHIT protein prot... 27 0.79
AY344835-1|AAR05806.1| 334|Anopheles gambiae ICHIT protein. 26 1.4
AY344830-1|AAR05801.1| 334|Anopheles gambiae ICHIT protein. 26 1.4
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr... 24 5.5
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein. 24 7.3
AY344832-1|AAR05803.1| 333|Anopheles gambiae ICHIT protein. 24 7.3
AY344831-1|AAR05802.1| 333|Anopheles gambiae ICHIT protein. 24 7.3
AY344829-1|AAR05800.1| 334|Anopheles gambiae ICHIT protein. 24 7.3
AF080563-1|AAC31943.1| 310|Anopheles gambiae Ultrabithorax home... 24 7.3
AF080562-1|AAC31942.1| 327|Anopheles gambiae Ultrabithorax home... 24 7.3
>AY344834-1|AAR05805.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 27.1 bits (57), Expect = 0.79
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -3
Query: 642 TSPTVSLVKGFPIEATGWSSSGSPCSLHTNTAW*LWTFILLSKHTHVTVCLSSDMP 475
T PT + P T WS P T T W + + H T SD+P
Sbjct: 190 TDPTATTTTPAPTTTTTWSDLPPPPPTTTTTVW-IDPTATTTTHAPTTTTTWSDLP 244
>AJ010903-1|CAA09389.1| 373|Anopheles gambiae ICHIT protein
protein.
Length = 373
Score = 27.1 bits (57), Expect = 0.79
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -3
Query: 642 TSPTVSLVKGFPIEATGWSSSGSPCSLHTNTAW*LWTFILLSKHTHVTVCLSSDMP 475
T PT + P T WS P T T W + + H T SD+P
Sbjct: 190 TDPTATTTTHAPTTTTTWSDLPPPPPTTTTTVW-IDPTATTTTHAPTTTTTWSDLP 244
>AY344835-1|AAR05806.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 26.2 bits (55), Expect = 1.4
Identities = 16/56 (28%), Positives = 19/56 (33%)
Frame = -3
Query: 642 TSPTVSLVKGFPIEATGWSSSGSPCSLHTNTAW*LWTFILLSKHTHVTVCLSSDMP 475
T PT + P T WS P T T W + + H T SD P
Sbjct: 190 TDPTATTTTPAPTTTTTWSDLPPPPPTTTTTVW-IDPTATTTTHAPTTTTTWSDQP 244
>AY344830-1|AAR05801.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 26.2 bits (55), Expect = 1.4
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -3
Query: 642 TSPTVSLVKGFPIEATGWSSSGSPCSLHTNTAW*LWTFILLSKHTHVTVCLSSDMP 475
T PT + P T WS P T T W + + H T SD+P
Sbjct: 190 TDPTATTTTHAPTTTTTWSDLPPPPPTTTTTVW-IDPTATTTTHVPPTTTTWSDLP 244
>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
precursor protein.
Length = 1623
Score = 24.2 bits (50), Expect = 5.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 284 CSSTVEAELCKSEGGTCVTE 225
C AE+C SE G C+ +
Sbjct: 727 CDCNKHAEICDSETGRCICQ 746
>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
Length = 1132
Score = 23.8 bits (49), Expect = 7.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 490 KTYSNMSMLR*EYEGPESPSSVGVKATRAAARGPTSSLNGKA 615
+TY++ P SPSSV +RA+ P SS + ++
Sbjct: 59 RTYASALSPSSSSASPSSPSSVASPNSRASNMSPESSASDQS 100
>AY344832-1|AAR05803.1| 333|Anopheles gambiae ICHIT protein.
Length = 333
Score = 23.8 bits (49), Expect = 7.3
Identities = 15/56 (26%), Positives = 19/56 (33%)
Frame = -3
Query: 642 TSPTVSLVKGFPIEATGWSSSGSPCSLHTNTAW*LWTFILLSKHTHVTVCLSSDMP 475
T PT + T WS P T T W + + H T SD+P
Sbjct: 189 TDPTATTTTPASTTTTTWSDLPPPPPTTTTTVW-IDPTATTTTHAPTTTTTWSDLP 243
>AY344831-1|AAR05802.1| 333|Anopheles gambiae ICHIT protein.
Length = 333
Score = 23.8 bits (49), Expect = 7.3
Identities = 15/56 (26%), Positives = 19/56 (33%)
Frame = -3
Query: 642 TSPTVSLVKGFPIEATGWSSSGSPCSLHTNTAW*LWTFILLSKHTHVTVCLSSDMP 475
T PT + T WS P T T W + + H T SD+P
Sbjct: 189 TDPTATTTTPASTTTTTWSDLPPPPPTTTTTVW-IDPTATTTTHVPTTTTTWSDLP 243
>AY344829-1|AAR05800.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 23.8 bits (49), Expect = 7.3
Identities = 15/56 (26%), Positives = 19/56 (33%)
Frame = -3
Query: 642 TSPTVSLVKGFPIEATGWSSSGSPCSLHTNTAW*LWTFILLSKHTHVTVCLSSDMP 475
T T + P T WS P T T W + + H T SD+P
Sbjct: 190 TDSTATTTTHAPTTTTTWSDLPPPPPTTTTTVW-IDPTATTTTHVPTTTTTWSDLP 244
Score = 23.4 bits (48), Expect = 9.7
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = -3
Query: 609 PIEATGWSSSGSPCSLHTNTAW*LWTFILLSKHTHVTVCLSSDMP 475
P T WS P + T T W + + H T SD+P
Sbjct: 168 PTTTTTWSDQPRPPTTTTTTVW-TDSTATTTTHAPTTTTTWSDLP 211
>AF080563-1|AAC31943.1| 310|Anopheles gambiae Ultrabithorax
homeotic protein IVa protein.
Length = 310
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 174 MVAVGSTHHQQVTATASVGVADKPL 100
M+ THH Q TA A+ PL
Sbjct: 21 MMTTTGTHHDQTTAAAAAAYRGFPL 45
>AF080562-1|AAC31942.1| 327|Anopheles gambiae Ultrabithorax
homeotic protein IIa protein.
Length = 327
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 174 MVAVGSTHHQQVTATASVGVADKPL 100
M+ THH Q TA A+ PL
Sbjct: 21 MMTTTGTHHDQTTAAAAAAYRGFPL 45
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 986,094
Number of Sequences: 2352
Number of extensions: 20984
Number of successful extensions: 53
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 98401338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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