Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c18
(908 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50859-8|CAN99723.1| 549|Caenorhabditis elegans Hypothetical pr... 188 4e-48
Z50859-7|CAH04735.1| 574|Caenorhabditis elegans Hypothetical pr... 188 4e-48
Z50859-4|CAA90730.1| 538|Caenorhabditis elegans Hypothetical pr... 188 4e-48
Z50859-3|CAA90728.1| 632|Caenorhabditis elegans Hypothetical pr... 188 4e-48
AL132948-45|CAD31822.2| 542|Caenorhabditis elegans Hypothetical... 31 1.1
U39999-9|AAY44013.1| 122|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z68221-3|CAA92495.1| 1249|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z68221-2|CAD59229.1| 1228|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z68221-1|CAB61039.2| 1252|Caenorhabditis elegans Hypothetical pr... 30 2.0
AY438645-1|AAR00672.1| 1249|Caenorhabditis elegans membrane Calc... 30 2.0
AY438644-1|AAR00671.1| 1252|Caenorhabditis elegans membrane Calc... 30 2.0
AJ223616-1|CAA11491.1| 1228|Caenorhabditis elegans calcium ATPas... 30 2.0
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 30 2.6
AL022288-4|CAA18365.1| 461|Caenorhabditis elegans Hypothetical ... 29 3.5
Z70752-3|CAA94755.3| 654|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 28 8.0
>Z50859-8|CAN99723.1| 549|Caenorhabditis elegans Hypothetical protein
T26C5.3d protein.
Length = 549
Score = 188 bits (459), Expect = 4e-48
Identities = 94/257 (36%), Positives = 142/257 (55%), Gaps = 3/257 (1%)
Frame = -1
Query: 869 IVSAYKQLYTIVKLPAVRKLALVLFTAKLGFCAADAVSGLKLVEAGVPREDXXXXXXXXX 690
+ +Y LY I+KL ++ + +L T KL F A+D ++ LKL+E G+P++
Sbjct: 286 VAESYAVLYKILKLKSIHYMVAILLTGKLAFAASDGMTSLKLIEMGIPKDRLAGIGVFLT 345
Query: 689 XVQIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTL-LGDSGPXXXXXX 513
+QI++P ++ K T GP PL+++L AF +TP L D
Sbjct: 346 PMQIMLPWMIGKWTAGPRPLNVFLLAFPYRIFIGGVFAALVWWTPHFSLPDGKFEYSVYI 405
Query: 512 XXXXXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAID 333
Y+FHQ Y MFV++MAF A++SDP +GGTYMT+LNT++NLG NWP T+ L D
Sbjct: 406 VWITGYIFHQLATYSMFVSMMAFIAQISDPRIGGTYMTMLNTLNNLGGNWPVTVVLAVTD 465
Query: 332 HLTYKSCSL--SKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWG 159
TYK C + +K C++ V A+ C S G C +DGY+I IC ++G +W +
Sbjct: 466 WFTYKDCVVKGTKEILYACNTKVLADQCSSGGDVCEVAVDGYFISVAICSVIGVIWYKVF 525
Query: 158 RPTINRLQRLPPSAWQI 108
I LQ++P S W++
Sbjct: 526 YNKIKYLQKIPRSQWRV 542
>Z50859-7|CAH04735.1| 574|Caenorhabditis elegans Hypothetical protein
T26C5.3c protein.
Length = 574
Score = 188 bits (459), Expect = 4e-48
Identities = 94/257 (36%), Positives = 142/257 (55%), Gaps = 3/257 (1%)
Frame = -1
Query: 869 IVSAYKQLYTIVKLPAVRKLALVLFTAKLGFCAADAVSGLKLVEAGVPREDXXXXXXXXX 690
+ +Y LY I+KL ++ + +L T KL F A+D ++ LKL+E G+P++
Sbjct: 311 VAESYAVLYKILKLKSIHYMVAILLTGKLAFAASDGMTSLKLIEMGIPKDRLAGIGVFLT 370
Query: 689 XVQIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTL-LGDSGPXXXXXX 513
+QI++P ++ K T GP PL+++L AF +TP L D
Sbjct: 371 PMQIMLPWMIGKWTAGPRPLNVFLLAFPYRIFIGGVFAALVWWTPHFSLPDGKFEYSVYI 430
Query: 512 XXXXXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAID 333
Y+FHQ Y MFV++MAF A++SDP +GGTYMT+LNT++NLG NWP T+ L D
Sbjct: 431 VWITGYIFHQLATYSMFVSMMAFIAQISDPRIGGTYMTMLNTLNNLGGNWPVTVVLAVTD 490
Query: 332 HLTYKSCSL--SKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWG 159
TYK C + +K C++ V A+ C S G C +DGY+I IC ++G +W +
Sbjct: 491 WFTYKDCVVKGTKEILYACNTKVLADQCSSGGDVCEVAVDGYFISVAICSVIGVIWYKVF 550
Query: 158 RPTINRLQRLPPSAWQI 108
I LQ++P S W++
Sbjct: 551 YNKIKYLQKIPRSQWRV 567
>Z50859-4|CAA90730.1| 538|Caenorhabditis elegans Hypothetical protein
T26C5.3b protein.
Length = 538
Score = 188 bits (459), Expect = 4e-48
Identities = 94/257 (36%), Positives = 142/257 (55%), Gaps = 3/257 (1%)
Frame = -1
Query: 869 IVSAYKQLYTIVKLPAVRKLALVLFTAKLGFCAADAVSGLKLVEAGVPREDXXXXXXXXX 690
+ +Y LY I+KL ++ + +L T KL F A+D ++ LKL+E G+P++
Sbjct: 275 VAESYAVLYKILKLKSIHYMVAILLTGKLAFAASDGMTSLKLIEMGIPKDRLAGIGVFLT 334
Query: 689 XVQIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTL-LGDSGPXXXXXX 513
+QI++P ++ K T GP PL+++L AF +TP L D
Sbjct: 335 PMQIMLPWMIGKWTAGPRPLNVFLLAFPYRIFIGGVFAALVWWTPHFSLPDGKFEYSVYI 394
Query: 512 XXXXXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAID 333
Y+FHQ Y MFV++MAF A++SDP +GGTYMT+LNT++NLG NWP T+ L D
Sbjct: 395 VWITGYIFHQLATYSMFVSMMAFIAQISDPRIGGTYMTMLNTLNNLGGNWPVTVVLAVTD 454
Query: 332 HLTYKSCSL--SKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWG 159
TYK C + +K C++ V A+ C S G C +DGY+I IC ++G +W +
Sbjct: 455 WFTYKDCVVKGTKEILYACNTKVLADQCSSGGDVCEVAVDGYFISVAICSVIGVIWYKVF 514
Query: 158 RPTINRLQRLPPSAWQI 108
I LQ++P S W++
Sbjct: 515 YNKIKYLQKIPRSQWRV 531
>Z50859-3|CAA90728.1| 632|Caenorhabditis elegans Hypothetical protein
T26C5.3a protein.
Length = 632
Score = 188 bits (459), Expect = 4e-48
Identities = 94/257 (36%), Positives = 142/257 (55%), Gaps = 3/257 (1%)
Frame = -1
Query: 869 IVSAYKQLYTIVKLPAVRKLALVLFTAKLGFCAADAVSGLKLVEAGVPREDXXXXXXXXX 690
+ +Y LY I+KL ++ + +L T KL F A+D ++ LKL+E G+P++
Sbjct: 369 VAESYAVLYKILKLKSIHYMVAILLTGKLAFAASDGMTSLKLIEMGIPKDRLAGIGVFLT 428
Query: 689 XVQIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTL-LGDSGPXXXXXX 513
+QI++P ++ K T GP PL+++L AF +TP L D
Sbjct: 429 PMQIMLPWMIGKWTAGPRPLNVFLLAFPYRIFIGGVFAALVWWTPHFSLPDGKFEYSVYI 488
Query: 512 XXXXXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAID 333
Y+FHQ Y MFV++MAF A++SDP +GGTYMT+LNT++NLG NWP T+ L D
Sbjct: 489 VWITGYIFHQLATYSMFVSMMAFIAQISDPRIGGTYMTMLNTLNNLGGNWPVTVVLAVTD 548
Query: 332 HLTYKSCSL--SKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWG 159
TYK C + +K C++ V A+ C S G C +DGY+I IC ++G +W +
Sbjct: 549 WFTYKDCVVKGTKEILYACNTKVLADQCSSGGDVCEVAVDGYFISVAICSVIGVIWYKVF 608
Query: 158 RPTINRLQRLPPSAWQI 108
I LQ++P S W++
Sbjct: 609 YNKIKYLQKIPRSQWRV 625
>AL132948-45|CAD31822.2| 542|Caenorhabditis elegans Hypothetical
protein Y39B6A.25 protein.
Length = 542
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 136 CNLLMVGRPHCNHKKPRITHITVSM*YPSIS 228
C L + RP NHK PR H+ SM +P S
Sbjct: 503 CRQLDIYRPRVNHKLPRDNHVYRSMCHPHYS 533
>U39999-9|AAY44013.1| 122|Caenorhabditis elegans Hypothetical
protein F41G3.21 protein.
Length = 122
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 202 LLYVLSSASYGCSGVDPPSTGYSDCLR 122
+L VL S S+GC + P TG SDC R
Sbjct: 8 VLAVLCSYSWGCVDLTNPRTGTSDCAR 34
>Z68221-3|CAA92495.1| 1249|Caenorhabditis elegans Hypothetical protein
W09C2.3c protein.
Length = 1249
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 200 VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 102
++C++LGF L WG+ + P AW++ +
Sbjct: 1064 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1096
>Z68221-2|CAD59229.1| 1228|Caenorhabditis elegans Hypothetical protein
W09C2.3b protein.
Length = 1228
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 200 VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 102
++C++LGF L WG+ + P AW++ +
Sbjct: 1043 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1075
>Z68221-1|CAB61039.2| 1252|Caenorhabditis elegans Hypothetical protein
W09C2.3a protein.
Length = 1252
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 200 VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 102
++C++LGF L WG+ + P AW++ +
Sbjct: 1067 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1099
>AY438645-1|AAR00672.1| 1249|Caenorhabditis elegans membrane Calcium
ATPase (136.9kD) (mca-1) protein.
Length = 1249
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 200 VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 102
++C++LGF L WG+ + P AW++ +
Sbjct: 1064 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1096
>AY438644-1|AAR00671.1| 1252|Caenorhabditis elegans membrane Calcium
ATPase (136.6kD) (mca-1) protein.
Length = 1252
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 200 VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 102
++C++LGF L WG+ + P AW++ +
Sbjct: 1067 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1099
>AJ223616-1|CAA11491.1| 1228|Caenorhabditis elegans calcium ATPase
protein.
Length = 1228
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 200 VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 102
++C++LGF L WG+ + P AW++ +
Sbjct: 1043 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1075
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 29.9 bits (64), Expect = 2.6
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = +1
Query: 547 SSVGVKATRAAARGPTSSLNGKAFNQRDSGAGPVVC-------LAKITGIMICTGTKGTA 705
++V + AAA TSS + +A Q+ ++ LA +TG TGT T
Sbjct: 2406 AAVALAQVAAAASASTSSADAQAVAQQQQVLEALLAMSMNPAALAALTGTSSSTGT-STP 2464
Query: 706 SKAKSSRGTPASTSFKPDTASAA 774
S K S+ P S TA+AA
Sbjct: 2465 SAPKKSKPAPQKESTSSATAAAA 2487
>AL022288-4|CAA18365.1| 461|Caenorhabditis elegans Hypothetical
protein ZK1025.7 protein.
Length = 461
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 296 TDNKCSSTVEAELCKSEGGTCVTEID 219
T NKC + V++++C S GG C +D
Sbjct: 414 TLNKCIAKVKSDVCHSTGGICKAAMD 439
>Z70752-3|CAA94755.3| 654|Caenorhabditis elegans Hypothetical
protein F25B3.3 protein.
Length = 654
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 220 SISVTQVPPSDLHNSASTVEEHLLSVNLDSEQLLYVK*SIAQSAKVLGQLVPRLETVFNN 399
S+S Q PSD+ S S ++ +LS +E YVK +S +L + + +VFNN
Sbjct: 147 SLSFVQASPSDISTSLSHIDYRVLSRISITELKQYVKDGHLRSCPMLERSI----SVFNN 202
Query: 400 V 402
+
Sbjct: 203 L 203
>Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.4 protein.
Length = 898
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 473 YCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNL 375
+C+ A+ AK+SD T+MT L TV++L
Sbjct: 351 FCIISALFELNAKISDHMEYETFMTTLQTVNSL 383
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 700 TASKAKSSRGTPASTSFKPDTASAAQKPSLAVNRTKAN 813
T+S + +S+ +PASTS P++++ P+ + N
Sbjct: 377 TSSSSTTSQSSPASTSTVPESSTVGSTPTTGLTTLSTN 414
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,201,800
Number of Sequences: 27780
Number of extensions: 455378
Number of successful extensions: 1176
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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