Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c16
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 38 0.013
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 33 0.21
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 33 0.21
02_05_1346 - 35831261-35831371,35831609-35831779,35831850-358318... 32 0.49
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189 31 0.86
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 31 1.5
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94... 30 2.6
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 30 2.6
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 29 3.5
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 3.5
12_02_1276 - 27487424-27488050,27488258-27489172 29 4.6
04_04_0219 - 23703579-23703747,23703836-23703944,23704170-237042... 29 4.6
04_01_0301 + 4016588-4016627,4016715-4018837 29 4.6
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 29 6.1
09_01_0016 - 376742-376883,377973-378964 28 8.1
08_01_0941 - 9301603-9301788,9301866-9301958,9302060-9302120,930... 28 8.1
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 28 8.1
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 37.5 bits (83), Expect = 0.013
Identities = 29/131 (22%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Frame = -3
Query: 376 NSEVLKNAIEKRKKSLMKDASMNTNTDHDIAAELTKHVGTLRKISLIAEEFNKKTAK--- 206
++E ++ +E+ ++SL + N ++D++++A+ + G L+K++L + KK +
Sbjct: 250 DAEKIEAELEEDRRSLQQVLEENQSSDYELSAKKKEQSGFLKKMTLCEKSIAKKKLELDK 309
Query: 205 ------NLKEIVDSVQEELIQKLEEIKAKQKPGAVHIETVRE*KEKYQLQERKIKKLNLT 44
LKE + ++ ++ +EI K+ H+E ++ + R I +LN
Sbjct: 310 KQPELLRLKEQISRLKSKIKSCNKEIDKKKDDSKKHLEEMKSLQSALVDVTRAIDELNEQ 369
Query: 43 NSN-SDRRALS 14
N SD+ L+
Sbjct: 370 GQNKSDKLQLA 380
>02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 33.5 bits (73), Expect = 0.21
Identities = 41/195 (21%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Frame = -3
Query: 589 KESPMKIETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTETIA-K 413
KE + L K E++ + +V + + EI++ + +++IS+ + ++ K
Sbjct: 550 KEKDDIVVRLTKEKEEIIKEKDDIVVRLTKEKEEIIKLLEEKEDIISLMKQKEDMFMSIK 609
Query: 412 NSSFKIPKMPLVNSEVLKNAIEKRK-KSLMKDASMNTNTDHDIAAELTKHVGTLRKISLI 236
K + + + ++ +K + LMK+ NT + E + + +
Sbjct: 610 EKENKAELKKIADEDAARSIKDKAEIMRLMKEKEDGNNTILKLKKESETLRSSYEESCRL 669
Query: 235 AEEFNKKTAKNL--KEIVDSVQEELIQKLEEIKAKQKPGAVHIETVRE*KEKYQLQERKI 62
E + A+ L KE DS+ EL ++LEE K + + +ET K +L++R I
Sbjct: 670 LESKKEDVARLLTDKENNDSIISELKKELEETKRLHEAHSQQLETKAAQVSK-ELEQR-I 727
Query: 61 KKLNLTNSNSDRRAL 17
+++ L +S +R +
Sbjct: 728 EEVKLMLDDSTKRRI 742
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = -3
Query: 301 TDHDIAAELTKHVGTLRKISLIAEEFNKKTAKNLKEIVDSVQEELIQKLEEIKAKQKPGA 122
T D +LT G + + +A+EF KEI+ +++EE++ KL AK G
Sbjct: 229 TSRDTKGQLTSEAGRIASLDALAKEFLGAANDKRKEILSNMEEEVV-KLSGSAAKH--GK 285
Query: 121 VHIETVRE*KEK 86
V+I ++ +K
Sbjct: 286 VYIAIAKKILDK 297
>02_05_1346 -
35831261-35831371,35831609-35831779,35831850-35831888,
35831987-35832049,35832616-35832679,35832709-35832778,
35832866-35832934,35833101-35833186,35833670-35833800,
35834021-35834083,35834166-35834211,35834542-35834618,
35834690-35834724,35835480-35835542,35835632-35835719,
35836027-35836077,35836201-35836269
Length = 431
Score = 32.3 bits (70), Expect = 0.49
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 235 AEEFNKKTAKNLKEIVDSV--QEELIQKLEEIKAKQKPGAVHIETVRE*KEKYQLQ 74
AE+ + L+ ++D V Q+E I LEE+K +Q VH++ + + EK +Q
Sbjct: 40 AEKSENQCTSQLRSLIDQVSSQQEKIVALEEMKIRQDEERVHLKILIQDLEKRSVQ 95
>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
Length = 470
Score = 31.5 bits (68), Expect = 0.86
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 6/150 (4%)
Frame = -3
Query: 460 NVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMNTNTDHDIAA 281
+V+S T +++ + P+ VN L N++ K+ + A + ++
Sbjct: 59 DVMSNATAMEIVTCSQDDVSRCPQEKTVNLHDLHNSLIASKELVRVLAHIWG--PGELNP 116
Query: 280 ELTKHVGTLRKISLIAEEFNKKTAKNLK-EIVDSVQEELIQKLEEIKAKQKPGAVH---- 116
T + LR +A +K K K E ++S++++L+Q++E K+KQK +
Sbjct: 117 STTSLISALRSEIDLARSHVRKLIKEQKSEGIESLKKQLVQEMESWKSKQKEKVANALQY 176
Query: 115 -IETVRE*KEKYQLQERKIKKLNLTNSNSD 29
+ + K+ + ER KKL + +N++
Sbjct: 177 IVSELDSEKKSRRRAERINKKLGMALANTE 206
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 178 QEELIQKLEEIKAKQKPGAVHIETVRE*KEKYQLQERKIKKLNLTNSNSDR 26
+++L + +E +KAK G++ R E L+E IK +LTN N D+
Sbjct: 789 KQQLDRDVETLKAKSNVGSIRTFLSRNGIECSDLEELFIKDQSLTNENVDK 839
>12_01_0125 -
946480-947242,947283-947374,947462-947680,948059-949156
Length = 723
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -3
Query: 568 ETLQ-KFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTETIAKNSSFKIP 392
+TL+ K E + N E S N V VEA A D + E++++ P
Sbjct: 512 DTLKWKKIAESISTNRTETASWENSVTHWVEAALATDLEVLKLMNKAPESLSRKRGADKP 571
Query: 391 KMPLVNSEVLKNAIEKRK 338
K PLV E + I KR+
Sbjct: 572 KAPLV-VEAPRTTISKRQ 588
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/90 (18%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = -3
Query: 376 NSEVLKNAIEKRKKSLMKDASMNTNTDHDIAAELTKHVGTLRKISLIAEEFNKKTAKNLK 197
+S++L++++ ++K + + + + ++ +++E HV L+K++ + E + K
Sbjct: 281 SSDILESSLNAKEKIISELNAELRSIENTLSSERETHVNELKKLTALLSEKENALTELKK 340
Query: 196 EIVDSVQEELIQKL-EEIKAKQKPGAVHIE 110
E+ + L+ L ++++ Q G IE
Sbjct: 341 ELQERPTRRLVDDLKKKVQILQAVGYNSIE 370
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 29.5 bits (63), Expect = 3.5
Identities = 30/128 (23%), Positives = 59/128 (46%)
Frame = -3
Query: 415 KNSSFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMNTNTDHDIAAELTKHVGTLRKISLI 236
KNS+ P P +S+ +K++ K + + + N D D+ A + I+
Sbjct: 213 KNSNGMQPSEPSQSSKAVKSSETSEVKGSLPEGFFD-NKDADLRARGIQPPKI--DINDA 269
Query: 235 AEEFNKKTAKNLKEIVDSVQEELIQKLEEIKAKQKPGAVHIETVRE*KEKYQLQERKIKK 56
+EF K+ ++L+E+ D ++EE I E +++ + E R+ + + Q + K
Sbjct: 270 YKEFEKEIQEDLQEVDDRLEEEEIDAAAE---REEYLTLEQEEYRQRVDMLKKQLTESKA 326
Query: 55 LNLTNSNS 32
T +NS
Sbjct: 327 ARTTKANS 334
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 247 ISLIAEEFNKKTAKNLKEIVDSVQEELIQKLEEIKAKQKPGAVHIETVRE 98
+SL + L E+V +++EL + +E+KAKQ + TV E
Sbjct: 720 LSLFQNRVEQNEHHKLGELVKKLEQELQESKQELKAKQAQYEKSVSTVSE 769
>12_02_1276 - 27487424-27488050,27488258-27489172
Length = 513
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 220 KKTAKNLKEIVDSVQEELIQKLEEIKAKQKPGAVHI 113
++T +++ +DS+ EE+I + EE K +Q V +
Sbjct: 246 RRTLHGIRDTIDSILEEIISEKEEAKQQQDNNLVDV 281
>04_04_0219 -
23703579-23703747,23703836-23703944,23704170-23704272,
23704365-23704396,23704855-23705072,23706295-23706618,
23706982-23707069,23707179-23707263
Length = 375
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 118 HIETVRE*KEKYQLQERKIKKLNLTNSNSDRRALSK 11
H ETVR KEKYQ E I++ N+ R +K
Sbjct: 131 HAETVRLYKEKYQFTEEAIRQSPFIRDNNLNRRSAK 166
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 29.1 bits (62), Expect = 4.6
Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 11/160 (6%)
Frame = -3
Query: 493 LEIVEAEKAVDNVISMTEVSVTETIAKNSSFKIP----KMPLVNSEVLKNAIEKRKKSLM 326
L+++ E+ ++++ ++ + + + + K L + K+ +E K L
Sbjct: 82 LKVLNVEEKYNHMVEKLQMELCALVKEKEKMMMESEDLKRRLEEIQAKKDLMESEKDMLR 141
Query: 325 KDASMNTNTDHDIAAELTKHVGTLRKISLIAEEFNKKTAKNLKEIVDSVQ---EELIQKL 155
+A + AE+ + L ++ E K AK + D + E+L +K
Sbjct: 142 SEAMITKQKQIMFEAEIER----LNMELVVLTEAKKAAAKACEAQNDEIMKELEDLKRKF 197
Query: 154 EEIKAK----QKPGAVHIETVRE*KEKYQLQERKIKKLNL 47
EE++ Q + V KEKY E ++KKL +
Sbjct: 198 EELQTNKDLVQAKNDELLSNVLAIKEKYGQSEAEVKKLQM 237
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Frame = -3
Query: 352 IEKRKKSLMKDASMNTNTDHDIA---AELTKHVGTLRKIS---------LIAEEFNKKTA 209
++KR+K L + N + +I E+ KH+ +++S L E+ NK+
Sbjct: 135 VDKRRK-LEAELRANESLRDEIVQLRGEIDKHLVVRKELSAKSASIMHELTREQSNKQQI 193
Query: 208 KNLKEIVDSVQEELIQKLEEIKAKQKPGAVHIETVRE*KEKYQLQERKIKKLNLTNSNSD 29
LK +D++++EL+ + +QK +E + ++ ++I+++ +NS+
Sbjct: 194 PMLKAEIDALRQELVHARSACELEQKGNFQLVEQKKAMEKNMISMAQEIEQMRAELANSE 253
Query: 28 RR 23
R
Sbjct: 254 GR 255
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 28.3 bits (60), Expect = 8.1
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Frame = -3
Query: 481 EAEKAVDNVISMTEVSVTETI-AKNSSFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMNT 305
E++ D+V+ + + + A N K+P EV ++ + +KK + A NT
Sbjct: 197 ESDSGDDDVLLDPALQANKNVLAFNGKRKVPPQ-----EVGQSLRQPKKKKMEAPAQGNT 251
Query: 304 NTDHDIAAELTKHVGTLRKISLIAEEFNKKTAKNLKEIVDSVQEELIQKLEEIKAKQ 134
+ D ++ + + +SL+ EE + ++ DS L K++++ Q
Sbjct: 252 DIDTQFKEKIASYFFLGKVVSLLDEEHPDLFKEAFLKLADSKASALDAKIKQLTLAQ 308
>08_01_0941 -
9301603-9301788,9301866-9301958,9302060-9302120,
9302397-9302648,9302903-9303720,9303993-9304490
Length = 635
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -3
Query: 616 LSRRTTPPKKESPMKIETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEV 437
L + PPKK+ K E + LVP+ EI +P +EI + ++ ++ EV
Sbjct: 249 LGKPPRPPKKKVTDKAEEPEMHKENLVPEVPPEI-EVPEVPMEIAVPDVQMEIKVTEPEV 307
Query: 436 SVTETI 419
V ++
Sbjct: 308 QVVASV 313
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 28.3 bits (60), Expect = 8.1
Identities = 25/106 (23%), Positives = 43/106 (40%)
Frame = -3
Query: 427 ETIAKNSSFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMNTNTDHDIAAELTKHVGTLRK 248
+T+A N+S + P + K K+S++ NT AAE + RK
Sbjct: 587 QTLASNASPQQSPAPSAQISTPCSTQRKVKRSILAGNCFNTPDSKRPAAENAQVRDLQRK 646
Query: 247 ISLIAEEFNKKTAKNLKEIVDSVQEELIQKLEEIKAKQKPGAVHIE 110
+ + E K ++L ++ ++E I+ L K P A E
Sbjct: 647 VKAMEAEIEKMKKEHLLQL--KQKDEFIRDLINRKTSNVPEAATCE 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,468,767
Number of Sequences: 37544
Number of extensions: 255080
Number of successful extensions: 827
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -