Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c16
         (840 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    29   0.23 
DQ974164-1|ABJ52804.1|  410|Anopheles gambiae serpin 4C protein.       25   3.8  
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   6.6  
AJ302662-1|CAC35527.1|   76|Anopheles gambiae gSG9 protein protein.    23   8.7  

>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
 Frame = -3

Query: 526 TVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIE 347
           TVE+V+  +    +VEA    +NV++  +   ++ +   SS K P + +V    L+ A+ 
Sbjct: 45  TVEVVASTSVDSAVVEAVTGEENVMAAEDSVTSQPVESFSSSKEPAL-VVGGSKLQEAL- 102

Query: 346 KRKKSLMKDASMNTNTDHDI---AAELTKHVGTLRKISLIAEEFNKKTAKNLKEIVDSVQ 176
           K    L        N  H I   A  +   +  + +  +      ++T K+LKE ++   
Sbjct: 103 KVAGELHAYTKDRNNVHHPIKKMAVSILSALACVERELMTTRLRAERTEKSLKEALEGCS 162

Query: 175 E 173
           +
Sbjct: 163 Q 163


>DQ974164-1|ABJ52804.1|  410|Anopheles gambiae serpin 4C protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 532 KNTVEIVSIP-NQVLEIVEAEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKN 356
           +N    + +P N   ++V++ ++      + ++ VT+   K+ +   PKM + NS  LKN
Sbjct: 179 QNVTMYIFMPMNSTRQLVQSMQSKITAERVNDI-VTKMKMKSVTVMFPKMHISNSISLKN 237

Query: 355 AIEK 344
            +++
Sbjct: 238 VLQQ 241


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 236 YQRYLSQGSNVLSQLSGNIVIRVC 307
           Y  Y+ Q    L QLSG  V R C
Sbjct: 616 YSDYVLQEEGPLKQLSGKAVCRKC 639


>AJ302662-1|CAC35527.1|   76|Anopheles gambiae gSG9 protein protein.
          Length = 76

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 230 FSYQR-YLSQGSNVLSQLSGNIVIR 301
           F Y R YLSQ S+ L+  + N+V R
Sbjct: 28  FQYNRPYLSQPSSQLASTAANVVQR 52


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,497
Number of Sequences: 2352
Number of extensions: 11212
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88891965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)