Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c16
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   3.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   3.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   3.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.1  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 597 GVVLLDNFMGNAFVILSIIVW 659
           G ++L   +GNA VILS+  +
Sbjct: 44  GFLVLATVLGNALVILSVFTY 64


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 597 GVVLLDNFMGNAFVILSIIVW 659
           G ++L   +GNA VILS+  +
Sbjct: 44  GFLVLATVLGNALVILSVFTY 64


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 349 EKRKKSLMKDASMNTNTDHDIA 284
           ++R  S+ + AS + NTD DIA
Sbjct: 112 DERPNSIHQRASFSLNTDGDIA 133


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 597 GVVLLDNFMGNAFVILSIIVW 659
           G ++L   +GNA VILS+  +
Sbjct: 44  GFLVLATVLGNALVILSVFTY 64


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 552 NFCNVSIFIGDSFLGGVVLLDNFMGNAFVILS 647
           N C  SI +   F   V   DN + NAF  L+
Sbjct: 111 NTCQPSIPLEPDFTSDVTERDNHLVNAFKTLT 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,853
Number of Sequences: 438
Number of extensions: 3683
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)