Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c14
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 280 2e-76
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 270 2e-73
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 29 0.87
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 28 1.5
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 2.7
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 3.5
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 4.6
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 6.1
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 26 6.1
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 6.1
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 8.1
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 280 bits (687), Expect = 2e-76
Identities = 132/191 (69%), Positives = 160/191 (83%), Gaps = 2/191 (1%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLD 702
SVAYKNV+GARR+SWR++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+
Sbjct: 48 SVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLE 107
Query: 701 KHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQP 522
KHLIP A++ ESKVFY KMKGDYYRYLAE A GE R + S + Y+ A EI+ A++ P
Sbjct: 108 KHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAP 167
Query: 521 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 342
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLR
Sbjct: 168 THPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLR 227
Query: 341 DNLTLWTSDTQ 309
DNLTLWTSD +
Sbjct: 228 DNLTLWTSDAE 238
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 270 bits (661), Expect = 2e-73
Identities = 127/191 (66%), Positives = 156/191 (81%), Gaps = 2/191 (1%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLD 702
SVAYKN++GARR+SWR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+
Sbjct: 47 SVAYKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLE 106
Query: 701 KHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQP 522
KHLIP A+ ESKVFY KMKGDYYRYLAE GE + S +AY+ A +I+ A++ P
Sbjct: 107 KHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPP 166
Query: 521 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 342
T P+RLGLALNFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLR
Sbjct: 167 TDPMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLR 226
Query: 341 DNLTLWTSDTQ 309
DNLTLWTSD +
Sbjct: 227 DNLTLWTSDAE 237
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 29.1 bits (62), Expect = 0.87
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Frame = -1
Query: 794 SERKQQMAKEYR-VKVEKELR-EICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYL 621
S + ++ + YR VK K L +IC+ + L L A++ E + + RY+
Sbjct: 994 SIKSHELHEAYRLVKANKILEAQICFRSIIYLA--LTTVANSEEEADEISALIDECCRYI 1051
Query: 620 AEVATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 483
++ E R ED+++A + ++ + A +QP H I L LA+N S
Sbjct: 1052 VALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 1.5
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Frame = -1
Query: 812 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 636
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 635 YYR-YLAEVATGETRHSVV--EDSQKAYQDAFEISKAKMQ 525
+R Y+ E+ + ++ E KA +D E SK ++Q
Sbjct: 100 SFRDYVGELNLLKELCKMINEEPELKAIEDT-EESKKQLQ 138
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 156 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 284
L + SV+I +TFS V+R L +T + VCW C L+ A+
Sbjct: 43 LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -1
Query: 710 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 573
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 863 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 747
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 809 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 684
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 127 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 35
FA LPVP K C F F+ L +W+ D+
Sbjct: 31 FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -1
Query: 572 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 399
Q+ D E + P H L F S Y ++ D QLA Q F ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474
Query: 398 DTLNEDSYKDSTLIMQLLRDN 336
+ L +++ S ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 741
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,561
Number of Sequences: 5004
Number of extensions: 68091
Number of successful extensions: 229
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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