Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c14
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 280 9e-76
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 279 2e-75
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 279 2e-75
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 274 6e-74
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 273 1e-73
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 268 4e-72
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 164 7e-41
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 158 6e-39
12_01_0915 - 8908643-8908756,8909086-8909203,8909570-8909682,891... 32 0.69
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 29 3.7
02_02_0106 + 6814391-6817007,6817086-6817462 29 4.9
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 28 8.5
04_04_1588 - 34633057-34633824 28 8.5
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 280 bits (687), Expect = 9e-76
Identities = 134/189 (70%), Positives = 158/189 (83%), Gaps = 2/189 (1%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLD 702
SVAYKNV+GARR+SWR+ISSIEQK E G+E + + KEYR K+E EL +IC +L LLD
Sbjct: 271 SVAYKNVIGARRASWRIISSIEQKEESRGNEDRCTLIKEYRGKIETELSKICDGILKLLD 330
Query: 701 KHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQP 522
HL+P ++ PESKVFYLKMKGDYYRYLAE TG R E++ AY+ A +I+ A++ P
Sbjct: 331 SHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPP 390
Query: 521 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 342
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLR
Sbjct: 391 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 450
Query: 341 DNLTLWTSD 315
DNLTLWTSD
Sbjct: 451 DNLTLWTSD 459
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 279 bits (685), Expect = 2e-75
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 3/200 (1%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTEG--SERKQQMAKEYRVKVEKELREICYDVLGLLD 702
SVAYKNV+GARR+SWR++SSIEQK EG +E + KEYR K+E EL +IC +L LLD
Sbjct: 47 SVAYKNVIGARRASWRIVSSIEQKEEGRGNEEHVTLIKEYRGKIEAELSKICDGILKLLD 106
Query: 701 KHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQP 522
HL+P ++ ESKVFYLKMKGDY+RYLAE TG R E + AY+ A +I+ A + P
Sbjct: 107 SHLVPSSTAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTMVAYKAAQDIALADLAP 166
Query: 521 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 342
THPIRLGLALNFSVFYYEILNSPDKAC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLR
Sbjct: 167 THPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 226
Query: 341 DNLTLWTSD-TQGDGDEPAE 285
DNLTLWTSD T+ GDE E
Sbjct: 227 DNLTLWTSDLTEDGGDEVKE 246
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 279 bits (685), Expect = 2e-75
Identities = 134/196 (68%), Positives = 160/196 (81%), Gaps = 2/196 (1%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLD 702
SVAYKNV+GARR+SWR+ISSIEQK E G+E + + K+YR K+E EL +IC +L LL+
Sbjct: 53 SVAYKNVIGARRASWRIISSIEQKEESRGNEDRVTLIKDYRGKIETELTKICDGILKLLE 112
Query: 701 KHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQP 522
HL+P ++ PESKVFYLKMKGDYYRYLAE TG R E++ AY+ A +I+ A++ P
Sbjct: 113 SHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPP 172
Query: 521 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 342
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLR
Sbjct: 173 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 232
Query: 341 DNLTLWTSDTQGDGDE 294
DNLTLWTSD D E
Sbjct: 233 DNLTLWTSDISEDTAE 248
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 274 bits (672), Expect = 6e-74
Identities = 134/196 (68%), Positives = 155/196 (79%), Gaps = 2/196 (1%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLD 702
SVAYKNV+GARR+SWR+ISSIEQK E G+E KEYR ++E EL +IC +L LLD
Sbjct: 52 SVAYKNVIGARRASWRIISSIEQKEESRGNEAYVASIKEYRSRIETELSKICDGILKLLD 111
Query: 701 KHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQP 522
HL+P A+ ESKVFYLKMKGDY+RYLAE +G R E++ AY+ A +I+ A +
Sbjct: 112 SHLVPSATAAESKVFYLKMKGDYHRYLAEFKSGAERKEAAENTLVAYKSAQDIALADLPT 171
Query: 521 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 342
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFDDAIAELDTL E+SYKDSTLIMQLLR
Sbjct: 172 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLR 231
Query: 341 DNLTLWTSDTQGDGDE 294
DNLTLWTSD DG +
Sbjct: 232 DNLTLWTSDNAEDGGD 247
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 273 bits (669), Expect = 1e-73
Identities = 131/196 (66%), Positives = 152/196 (77%), Gaps = 2/196 (1%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMA--KEYRVKVEKELREICYDVLGLLD 702
SVAYKNV+GARR+SWR+ISSIEQK EG A + YR K+E EL IC +L LLD
Sbjct: 30 SVAYKNVIGARRASWRIISSIEQKEEGRGNDAHAATIRSYRGKIEAELARICDGILALLD 89
Query: 701 KHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQP 522
HL+P A ESKVFYLKMKGDY+RYLAE +G+ R E + AY+ A +I+ A + P
Sbjct: 90 SHLVPSAGAAESKVFYLKMKGDYHRYLAEFKSGDERKQAAESTMNAYKAAQDIALADLAP 149
Query: 521 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 342
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L E+SYKDSTLIMQLLR
Sbjct: 150 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLR 209
Query: 341 DNLTLWTSDTQGDGDE 294
DNLTLWTSD DG +
Sbjct: 210 DNLTLWTSDANDDGGD 225
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 268 bits (657), Expect = 4e-72
Identities = 129/196 (65%), Positives = 154/196 (78%), Gaps = 2/196 (1%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTEG--SERKQQMAKEYRVKVEKELREICYDVLGLLD 702
SVAYKNV+GARR+SWR++SSIEQK EG + A+ YR +VE EL IC +L LLD
Sbjct: 57 SVAYKNVIGARRASWRIVSSIEQKEEGRGAAGHAAAARSYRARVEAELSNICAGILRLLD 116
Query: 701 KHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQP 522
+ L+P A+ ++KVFYLKMKGDY+RYLAE TG R + + AYQ A +I+ ++ P
Sbjct: 117 ERLVPAAAAVDAKVFYLKMKGDYHRYLAEFKTGAERKDAADATLAAYQAAQDIAMKELSP 176
Query: 521 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 342
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLR
Sbjct: 177 THPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 236
Query: 341 DNLTLWTSDTQGDGDE 294
DNLTLWTSD Q DG +
Sbjct: 237 DNLTLWTSDMQDDGGD 252
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 164 bits (399), Expect = 7e-41
Identities = 95/217 (43%), Positives = 130/217 (59%), Gaps = 17/217 (7%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQK--TEGSERKQQMAKEYRVKVEKELREICYDVLGLLD 702
SV YKN++GA+R++ R+I SIE K T+G E + EYR KVE E+ +IC DV+ ++D
Sbjct: 24 SVGYKNLIGAKRAAMRIIGSIELKEETKGKESHVRQTAEYRRKVEAEMDKICCDVINIID 83
Query: 701 K-----HLIPKASNPESKVFYLKMKGDYYR----------YLAEVATGETRHSVVEDSQK 567
K + + K+ ++ + Y +L T ++ +
Sbjct: 84 KKGDYYRYLAEFKTGTEKIEVSELSLNAYEACDPFFIFNLFLFSQVTCFIEFTIYQ--VL 141
Query: 566 AYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLN 387
A + ++ + PT PIRLGLALN SVFY EI+NSPDKACQLAK AFD+A+AEL +L+
Sbjct: 142 VVYTASKTAQTDLTPTDPIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLS 201
Query: 386 EDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEPAEGGD 276
E++YKDSTLIMQLLRDNL LW SD D D+ E D
Sbjct: 202 EENYKDSTLIMQLLRDNLALWNSDMADDADDIRERTD 238
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 158 bits (383), Expect = 6e-39
Identities = 82/190 (43%), Positives = 121/190 (63%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKH 696
SV +K +GARR+SWR++ S+EQK ++ Y+ KVE ELR +C +VL ++ H
Sbjct: 46 SVGFKKTIGARRASWRILESLEQKVTAGDQPGVTINGYKKKVEDELRAVCNEVLSIIAIH 105
Query: 695 LIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTH 516
+P A++ E+ VF+ KMKGDYYRYLAE +TG + + + S AYQ A+ ++
Sbjct: 106 CLPLANSGENVVFFYKMKGDYYRYLAEFSTGTEKKAATDQSLMAYQ-AWPCAQL------ 158
Query: 515 PIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 336
FS+ EI+NSP++A Q+AKQA D+A AE+++ + YKDS L+MQLL++N
Sbjct: 159 ---------FSLL--EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKEN 207
Query: 335 LTLWTSDTQG 306
L LWTS+ G
Sbjct: 208 LALWTSELTG 217
>12_01_0915 -
8908643-8908756,8909086-8909203,8909570-8909682,
8911138-8911218,8911307-8911357,8912173-8912232,
8913353-8913419,8913509-8913759
Length = 284
Score = 31.9 bits (69), Expect = 0.69
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
Frame = -1
Query: 761 RVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVV 582
RVK + + EI L KH K +PES+ ++K+ Y E G+ +++
Sbjct: 63 RVKQDANVSEIKKAYYKLSLKHHPDKNPDPESRKLFVKIANAYEILKDESTRGQYDYAIA 122
Query: 581 EDSQKAYQDAFEISKAKMQPTHP--IRLGLALNFSVF-YYEILNSPDKACQLAKQ 426
+ Y A T P + +GL L S F Y KA + KQ
Sbjct: 123 HPEEVFYNTAQYYRAYYGHKTDPRAVLIGLLLIISAFQYLNQFGRYSKAIETVKQ 177
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -1
Query: 485 SVFYYEILNSPDKACQLAKQAFDDAIAEL-DTLNEDSYKDSTLIMQLLRD-NLTLWTSDT 312
S Y + PD + K++FD+ + E + +Y S + ++ D LWT +
Sbjct: 676 SFLTYPSMKVPDNFIYIHKRSFDECMVECRSNCSCVAYAYSNISSGIIDDTRCLLWTGEL 735
Query: 311 QGDGDEPAEGGDN*YLAA 258
D ++ +GG+N Y+ A
Sbjct: 736 I-DMEKVTQGGENLYIRA 752
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 225 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 67
CL +N H S +SSP PT C N+K F KL N ++SL L
Sbjct: 93 CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -1
Query: 743 ELREICYDVLGLLDKHLIPKASNPES-----KVFYLKMKG 639
+LRE+ YD+ LD+ L+ A+ P S K+ K+KG
Sbjct: 71 DLRELSYDMEDSLDRFLVKSAAEPGSCKKLFKILLTKIKG 110
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 237 KCVCWGECGEILVVAALGRLVAIALSV*RPK 329
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,954,074
Number of Sequences: 37544
Number of extensions: 437805
Number of successful extensions: 1293
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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