Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c14
(875 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical pr... 346 1e-95
Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical pr... 328 4e-90
U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein ... 326 1e-89
Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical pr... 267 6e-72
Z73910-3|CAA98135.1| 125|Caenorhabditis elegans Hypothetical pr... 83 2e-16
Z92779-4|CAE11294.1| 1816|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z92779-2|CAD56561.2| 1475|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z92779-1|CAB07173.1| 1813|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z79694-11|CAE11299.1| 1816|Caenorhabditis elegans Hypothetical p... 30 1.9
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p... 30 1.9
Z79694-9|CAB01966.1| 1813|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z73912-7|CAE11317.1| 1816|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z73912-5|CAD56619.2| 1475|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z73912-4|CAA98147.1| 1813|Caenorhabditis elegans Hypothetical pr... 30 1.9
M62830-1|AAA93094.1| 1815|Caenorhabditis elegans UNC-13 protein. 30 1.9
Z46935-9|CAA87053.1| 523|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z36949-3|CAA85417.1| 523|Caenorhabditis elegans Hypothetical pr... 29 4.4
U36187-1|AAC06337.1| 523|Caenorhabditis elegans cyclophilin iso... 29 4.4
AF421146-1|AAL27008.1| 523|Caenorhabditis elegans cyclophilin M... 29 4.4
U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical pr... 29 5.8
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical... 28 7.6
>Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical
protein F52D10.3a protein.
Length = 248
Score = 346 bits (850), Expect = 1e-95
Identities = 169/202 (83%), Positives = 183/202 (90%), Gaps = 2/202 (0%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKH 696
SVAYKNVVGARRSSWRVISSIEQKTEGSE+KQQMAKEYR KVEKELR+IC DVL LLDK
Sbjct: 47 SVAYKNVVGARRSSWRVISSIEQKTEGSEKKQQMAKEYREKVEKELRDICQDVLNLLDKF 106
Query: 695 LIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTH 516
LIPKA ESKVFYLKMKGDYYRYLAEVA+G+ R+SVVE SQ++YQ+AF+I+K KMQPTH
Sbjct: 107 LIPKAGAAESKVFYLKMKGDYYRYLAEVASGDDRNSVVEKSQQSYQEAFDIAKDKMQPTH 166
Query: 515 PIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 336
PIRLGLALNFSVF+YEILN+PDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN
Sbjct: 167 PIRLGLALNFSVFFYEILNAPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 226
Query: 335 LTLWTSDTQGDGDE--PAEGGD 276
LTLWTSD D + EGG+
Sbjct: 227 LTLWTSDAATDDTDANETEGGN 248
>Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical
protein M117.2 protein.
Length = 248
Score = 328 bits (805), Expect = 4e-90
Identities = 164/198 (82%), Positives = 177/198 (89%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKH 696
SVAYKNVVGARRSSWRVISSIEQKTEGSE+KQQ+AKEYRVKVE+EL +IC DVL LLD+
Sbjct: 47 SVAYKNVVGARRSSWRVISSIEQKTEGSEKKQQLAKEYRVKVEQELNDICQDVLKLLDEF 106
Query: 695 LIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTH 516
LI KA ESKVFYLKMKGDYYRYLAEVA+ E R +VVE SQKAYQ+A +I+K KMQPTH
Sbjct: 107 LIVKAGAAESKVFYLKMKGDYYRYLAEVAS-EDRAAVVEKSQKAYQEALDIAKDKMQPTH 165
Query: 515 PIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 336
PIRLGLALNFSVFYYEILN+P+ ACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN
Sbjct: 166 PIRLGLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 225
Query: 335 LTLWTSDTQGDGDEPAEG 282
LTLWTSD G D+ EG
Sbjct: 226 LTLWTSDV-GAEDQEQEG 242
>U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein
protein.
Length = 248
Score = 326 bits (801), Expect = 1e-89
Identities = 163/198 (82%), Positives = 176/198 (88%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKH 696
SVAYKNVVGARRSSWRVISSIEQKTEGSE+KQQ+AKEYRVKVE+EL +IC DVL LLD+
Sbjct: 47 SVAYKNVVGARRSSWRVISSIEQKTEGSEKKQQLAKEYRVKVEQELNDICQDVLKLLDEF 106
Query: 695 LIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTH 516
LI KA ESK FYLKMKGDYYRYLAEVA+ E R +VVE SQKAYQ+A +I+K KMQPTH
Sbjct: 107 LIVKAGAAESKAFYLKMKGDYYRYLAEVAS-EDRAAVVEKSQKAYQEALDIAKDKMQPTH 165
Query: 515 PIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 336
PIRLGLALNFSVFYYEILN+P+ ACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN
Sbjct: 166 PIRLGLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 225
Query: 335 LTLWTSDTQGDGDEPAEG 282
LTLWTSD G D+ EG
Sbjct: 226 LTLWTSDV-GAEDQEQEG 242
>Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical
protein F52D10.3b protein.
Length = 198
Score = 267 bits (655), Expect = 6e-72
Identities = 128/150 (85%), Positives = 140/150 (93%)
Frame = -1
Query: 875 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKH 696
SVAYKNVVGARRSSWRVISSIEQKTEGSE+KQQMAKEYR KVEKELR+IC DVL LLDK
Sbjct: 47 SVAYKNVVGARRSSWRVISSIEQKTEGSEKKQQMAKEYREKVEKELRDICQDVLNLLDKF 106
Query: 695 LIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTH 516
LIPKA ESKVFYLKMKGDYYRYLAEVA+G+ R+SVVE SQ++YQ+AF+I+K KMQPTH
Sbjct: 107 LIPKAGAAESKVFYLKMKGDYYRYLAEVASGDDRNSVVEKSQQSYQEAFDIAKDKMQPTH 166
Query: 515 PIRLGLALNFSVFYYEILNSPDKACQLAKQ 426
PIRLGLALNFSVF+YEILN+PDKACQLAKQ
Sbjct: 167 PIRLGLALNFSVFFYEILNAPDKACQLAKQ 196
>Z73910-3|CAA98135.1| 125|Caenorhabditis elegans Hypothetical
protein M117.3 protein.
Length = 125
Score = 83.4 bits (197), Expect = 2e-16
Identities = 52/127 (40%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 647 MKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 468
M D++RYL + R S+ AYQ+A I+K KMQPTHPIRLGLALN S ++
Sbjct: 1 MVADHFRYLVQY-DDINREEHAHKSRIAYQEALGIAKDKMQPTHPIRLGLALNASALNFD 59
Query: 467 ILNSPDKACQLAKQAFDDAIAELDTLNE--DSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 294
+LN P +A ++A+ A D A EL+ + DSY S L +L T + + DG E
Sbjct: 60 VLNLPKEANEIAQSALDSAHRELEKMKSSLDSYDISNLKRARTLYDLLKSTHEQRVDGKE 119
Query: 293 PAEGGDN 273
E DN
Sbjct: 120 -GEEADN 125
>Z92779-4|CAE11294.1| 1816|Caenorhabditis elegans Hypothetical protein
ZK524.2e protein.
Length = 1816
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1214 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1253
>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical protein
ZK524.2d protein.
Length = 2155
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1553 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1592
>Z92779-2|CAD56561.2| 1475|Caenorhabditis elegans Hypothetical
protein ZK524.2c protein.
Length = 1475
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 873 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 912
>Z92779-1|CAB07173.1| 1813|Caenorhabditis elegans Hypothetical protein
ZK524.2a protein.
Length = 1813
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1211 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1250
>Z79694-11|CAE11299.1| 1816|Caenorhabditis elegans Hypothetical
protein ZK524.2e protein.
Length = 1816
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1214 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1253
>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1553 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1592
>Z79694-9|CAB01966.1| 1813|Caenorhabditis elegans Hypothetical protein
ZK524.2a protein.
Length = 1813
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1211 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1250
>Z73912-7|CAE11317.1| 1816|Caenorhabditis elegans Hypothetical protein
ZK524.2e protein.
Length = 1816
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1214 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1253
>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical protein
ZK524.2d protein.
Length = 2155
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1553 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1592
>Z73912-5|CAD56619.2| 1475|Caenorhabditis elegans Hypothetical
protein ZK524.2c protein.
Length = 1475
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 873 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 912
>Z73912-4|CAA98147.1| 1813|Caenorhabditis elegans Hypothetical protein
ZK524.2a protein.
Length = 1813
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1211 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1250
>M62830-1|AAA93094.1| 1815|Caenorhabditis elegans UNC-13 protein.
Length = 1815
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 722 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 606
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1214 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1253
>Z46935-9|CAA87053.1| 523|Caenorhabditis elegans Hypothetical
protein F59E10.2 protein.
Length = 523
Score = 29.1 bits (62), Expect = 4.4
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = -1
Query: 815 IEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGD 636
++ KT +K++ A + + + C VL LDK +PK S+ E+ ++
Sbjct: 180 LDLKTSEEIKKEKDAMKDPKFYIRRMNNACKSVLDQLDKEYVPKKSSTETDETADEINAA 239
Query: 635 YYRYLAEVATG--ETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEIL 462
+Y +VA G T + V ++ A D + ++++ +R L NF E+
Sbjct: 240 HYSQ-GKVAAGFTSTVMAPVTSNKAAVLDNDTVRYSRVKKNAFVR--LVTNFGPLNLELF 296
Query: 461 -NSPDKACQ 438
KAC+
Sbjct: 297 APKVPKACE 305
>Z36949-3|CAA85417.1| 523|Caenorhabditis elegans Hypothetical
protein F59E10.2 protein.
Length = 523
Score = 29.1 bits (62), Expect = 4.4
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = -1
Query: 815 IEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGD 636
++ KT +K++ A + + + C VL LDK +PK S+ E+ ++
Sbjct: 180 LDLKTSEEIKKEKDAMKDPKFYIRRMNNACKSVLDQLDKEYVPKKSSTETDETADEINAA 239
Query: 635 YYRYLAEVATG--ETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEIL 462
+Y +VA G T + V ++ A D + ++++ +R L NF E+
Sbjct: 240 HYSQ-GKVAAGFTSTVMAPVTSNKAAVLDNDTVRYSRVKKNAFVR--LVTNFGPLNLELF 296
Query: 461 -NSPDKACQ 438
KAC+
Sbjct: 297 APKVPKACE 305
>U36187-1|AAC06337.1| 523|Caenorhabditis elegans cyclophilin
isoform 4 protein.
Length = 523
Score = 29.1 bits (62), Expect = 4.4
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = -1
Query: 815 IEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGD 636
++ KT +K++ A + + + C VL LDK +PK S+ E+ ++
Sbjct: 180 LDLKTSEEIKKEKDAMKDPKFYIRRMNNACKSVLDQLDKEYVPKKSSTETDETADEINAA 239
Query: 635 YYRYLAEVATG--ETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEIL 462
+Y +VA G T + V ++ A D + ++++ +R L NF E+
Sbjct: 240 HYSQ-GKVAAGFTSTVMAPVTSNKAAVLDNDTVRYSRVKKNAFVR--LVTNFGPLNLELF 296
Query: 461 -NSPDKACQ 438
KAC+
Sbjct: 297 APKVPKACE 305
>AF421146-1|AAL27008.1| 523|Caenorhabditis elegans cyclophilin
MOG-6 protein.
Length = 523
Score = 29.1 bits (62), Expect = 4.4
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = -1
Query: 815 IEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGD 636
++ KT +K++ A + + + C VL LDK +PK S+ E+ ++
Sbjct: 180 LDLKTSEEIKKEKDAMKDPKFYIRRMNNACKSVLDQLDKEYVPKKSSTETDETADEINAA 239
Query: 635 YYRYLAEVATG--ETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEIL 462
+Y +VA G T + V ++ A D + ++++ +R L NF E+
Sbjct: 240 HYSQ-GKVAAGFTSTVMAPVTSNKAAVLDNDTVRYSRVKKNAFVR--LVTNFGPLNLELF 296
Query: 461 -NSPDKACQ 438
KAC+
Sbjct: 297 APKVPKACE 305
>U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical protein
F20D12.2 protein.
Length = 1116
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/97 (20%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Frame = -1
Query: 812 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 633
E+K + E+++ +AKE +KVEKE+ E + ++D + + E K+ + ++ G +
Sbjct: 757 EKKLKRIEQEKNIAKELVLKVEKEISENALRM--IIDDEIRRERRERERKMAH-EIVGKF 813
Query: 632 YRYLAEVATGETRHSVVE--DSQKAYQDAFEISKAKM 528
+R + + + +E + ++ + EI + ++
Sbjct: 814 WRVVLKSVDNHVKSICIEMVNEKETISEGLEIFRERV 850
>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
protein Y111B2A.14 protein.
Length = 1481
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = -1
Query: 869 AYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREI 729
A K+ + A++ R+ ++K E ERK++ +E + + E+E+REI
Sbjct: 984 AEKDRIEAKKFEERMKKE-QEKQEEKERKEREKREEKERKEREIREI 1029
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,001,006
Number of Sequences: 27780
Number of extensions: 383989
Number of successful extensions: 1256
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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