Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c12
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 474 e-134
03_01_0034 + 318432-318825,318902-319851 472 e-133
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 472 e-133
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 472 e-133
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 471 e-133
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 471 e-133
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 470 e-133
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 464 e-131
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 224 8e-59
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 219 2e-57
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 219 2e-57
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 218 5e-57
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 124 1e-28
03_06_0181 - 32180321-32180491,32180849-32181010 29 3.5
02_01_0788 - 5912821-5913392,5913453-5913953,5914030-5914117 29 3.5
08_02_1008 - 23508377-23508541,23508940-23509116 29 6.1
05_01_0120 - 828834-831143 29 6.1
03_06_0386 + 33555682-33556344,33557138-33557299 29 6.1
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426... 28 8.1
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 474 bits (1168), Expect = e-134
Identities = 214/247 (86%), Positives = 236/247 (95%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
NATLSVHQLVEN DE +DNEALYDICFRTLKL TPT+GDLNHL+SATMSGVT CLRFP
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFP 243
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
GQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRAL+VPELTQQM+DAKNMM A
Sbjct: 244 GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAA 303
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 300
DPRHGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK++VCDIPPRGLKM
Sbjct: 304 DPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKM 363
Query: 299 SATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 120
+ATF+GN+T+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQ
Sbjct: 364 AATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQ 423
Query: 119 QYQDATA 99
QYQDATA
Sbjct: 424 QYQDATA 430
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 472 bits (1163), Expect = e-133
Identities = 214/247 (86%), Positives = 235/247 (95%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
NATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CLRFP
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
GQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRAL+VPELTQQM+DAKNMM A
Sbjct: 244 GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAA 303
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 300
DPRHGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK+ VCDIPP GLKM
Sbjct: 304 DPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKM 363
Query: 299 SATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 120
++TFIGN+T+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ
Sbjct: 364 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423
Query: 119 QYQDATA 99
QYQDATA
Sbjct: 424 QYQDATA 430
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 472 bits (1163), Expect = e-133
Identities = 213/247 (86%), Positives = 236/247 (95%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
NATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CLRFP
Sbjct: 205 NATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 264
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
GQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRAL+VPELTQQM+DAKNMM A
Sbjct: 265 GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAA 324
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 300
DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPPRGL M
Sbjct: 325 DPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSM 384
Query: 299 SATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 120
++TFIGN+T+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ
Sbjct: 385 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 444
Query: 119 QYQDATA 99
QYQDATA
Sbjct: 445 QYQDATA 451
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 472 bits (1163), Expect = e-133
Identities = 213/247 (86%), Positives = 236/247 (95%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
NATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CLRFP
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
GQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRAL+VPELTQQM+DAKNMM A
Sbjct: 244 GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAA 303
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 300
DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPPRGL M
Sbjct: 304 DPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSM 363
Query: 299 SATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 120
++TFIGN+T+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ
Sbjct: 364 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423
Query: 119 QYQDATA 99
QYQDATA
Sbjct: 424 QYQDATA 430
>05_04_0306 + 20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 471 bits (1162), Expect = e-133
Identities = 212/247 (85%), Positives = 236/247 (95%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
NATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CLRFP
Sbjct: 364 NATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 423
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
GQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRAL+VPELTQQM+DAKNMM A
Sbjct: 424 GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAA 483
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 300
DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPPRGL M
Sbjct: 484 DPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSM 543
Query: 299 SATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 120
++TF+GN+T+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ
Sbjct: 544 ASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 603
Query: 119 QYQDATA 99
QYQDATA
Sbjct: 604 QYQDATA 610
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 471 bits (1161), Expect = e-133
Identities = 213/247 (86%), Positives = 235/247 (95%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
NATLSVHQLVEN DE +DNEALYDICFRTLKL TPT+GDLNHL+SATMSGVT CLRFP
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFP 243
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
GQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRAL+VPELTQQM+DAKNMM A
Sbjct: 244 GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAA 303
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 300
DPRHGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK++VCDIPP GLKM
Sbjct: 304 DPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKM 363
Query: 299 SATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 120
++TFIGN+T+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQ
Sbjct: 364 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQ 423
Query: 119 QYQDATA 99
QYQDATA
Sbjct: 424 QYQDATA 430
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 470 bits (1158), Expect = e-133
Identities = 213/247 (86%), Positives = 235/247 (95%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
NATLSVHQLVEN DE +DNEALYDICFRTLKL TPT+GDLNHL+SATMSGVT CLRFP
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFP 243
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
GQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRAL+VPELTQQM+DAKNMM A
Sbjct: 244 GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAA 303
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 300
DPRHGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK++VCDIPP GLKM
Sbjct: 304 DPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPIGLKM 363
Query: 299 SATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 120
++TFIGN+T+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQ
Sbjct: 364 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQ 423
Query: 119 QYQDATA 99
QYQDATA
Sbjct: 424 QYQDATA 430
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 464 bits (1143), Expect = e-131
Identities = 209/247 (84%), Positives = 233/247 (94%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
NATLSVHQLVEN DE +DNEALYDICFRTLKLT P++GDLNHL+SATMSGVT CLRFP
Sbjct: 200 NATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISATMSGVTCCLRFP 259
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
GQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRAL+VPELTQQM+DAKNMM A
Sbjct: 260 GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAA 319
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 300
DPRHGRYLT +A+FRGRMS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPP GL M
Sbjct: 320 DPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSM 379
Query: 299 SATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 120
++TF+GN+T+IQE+F+R+SEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV+EYQ
Sbjct: 380 ASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQ 439
Query: 119 QYQDATA 99
QYQDATA
Sbjct: 440 QYQDATA 446
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 224 bits (547), Expect = 8e-59
Identities = 100/249 (40%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
N+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN L+S +S +TT LRF
Sbjct: 186 NSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFD 245
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
G +N D+ + N+VP+PR+HF + +AP+ S + LSVPE+T +F+ +MMA C
Sbjct: 246 GAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKC 305
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP----- 315
DPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 306 DPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPG 365
Query: 314 ---RGLKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 144
++ + I N TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 366 GDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425
Query: 143 NDLVSEYQQ 117
L +Y++
Sbjct: 426 AALEKDYEE 434
>03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 219 bits (536), Expect = 2e-57
Identities = 97/249 (38%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
N+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN L+S +S +TT LRF
Sbjct: 267 NSVLSTHSLIEHTDVVVLLDNEAIYDICKRSLDIERPTYTNLNRLISQVISSLTTSLRFD 326
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
G +N D+ + N+VP+PR+HF + +AP+ S + SVPE+T +F+ ++MA C
Sbjct: 327 GAINVDITEFQTNLVPYPRIHFMLSSYAPIISVEKAFHEQHSVPEITNSVFEPASVMAKC 386
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG--- 309
DPRHG+Y+ ++RG + K+V+ + +I+ + + FV+W P K + PP
Sbjct: 387 DPRHGKYMACCLMYRGDVVPKDVNAAVHSIKTRRTVQFVDWCPTGFKCGINYQPPTAVPG 446
Query: 308 -----LKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 144
++ + I N TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 447 GDLAKVRRAVCMISNNTAVAEVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 506
Query: 143 NDLVSEYQQ 117
L +Y++
Sbjct: 507 AALEKDYEE 515
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 219 bits (535), Expect = 2e-57
Identities = 99/249 (39%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
N+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN LVS +S +T LRF
Sbjct: 186 NSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFD 245
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
G LN D+ + N+VP+PR+HF + +AP+ S + LSV E+T F+ +MMA C
Sbjct: 246 GALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKC 305
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP----- 315
DPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 306 DPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPS 365
Query: 314 ---RGLKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 144
++ + I N+T++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 366 GDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425
Query: 143 NDLVSEYQQ 117
L +Y++
Sbjct: 426 AALEKDYEE 434
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 218 bits (532), Expect = 5e-57
Identities = 99/249 (39%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
N+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN LVS +S +T LRF
Sbjct: 186 NSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFD 245
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAAC 480
G LN D+ + N+VP+PR+HF + +AP+ S + LSV E+T F+ +MMA C
Sbjct: 246 GALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKC 305
Query: 479 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP----- 315
DPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 306 DPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPG 365
Query: 314 ---RGLKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 144
++ + I N+T++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 366 GDLAKVQRAVCMISNSTSVVEVFSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425
Query: 143 NDLVSEYQQ 117
L +Y++
Sbjct: 426 AALEKDYEE 434
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 124 bits (298), Expect = 1e-28
Identities = 76/250 (30%), Positives = 124/250 (49%), Gaps = 10/250 (4%)
Frame = -3
Query: 839 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 660
N+ L++ +L N D +DN AL I L L PT+ N LVS MS TT LR+P
Sbjct: 187 NSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLANPTFAQTNSLVSTVMSASTTTLRYP 246
Query: 659 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLT-SRGSQQYRALSVPELTQQMFDAKNMMAA 483
G +N DL L +++P PR HF M G+ PLT R R +V ++ +++ KN+M +
Sbjct: 247 GYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVS 306
Query: 482 CDPRH-----GRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 318
R+ +Y+++ + +G + +V E + I+ + F+EW
Sbjct: 307 SYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEW------------G 354
Query: 317 PRGLKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTG----EGMDEMEFTEAES 150
P +++S + N T+I+ LF + Q+ + +++AFL Y E D EF E+
Sbjct: 355 PASIQVSGLMLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFEDNDLSEFDESRE 414
Query: 149 NMNDLVSEYQ 120
+ LV EY+
Sbjct: 415 IIESLVDEYK 424
>03_06_0181 - 32180321-32180491,32180849-32181010
Length = 110
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 449 RRSDIYHGEGHRQPSCSWHQTFAASAPAQIE 541
R+ ++HGEG R+ S + +Q+F +SA Q++
Sbjct: 20 RQLQLFHGEGLRRLSPASYQSFCSSACGQVD 50
>02_01_0788 - 5912821-5913392,5913453-5913953,5914030-5914117
Length = 386
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 559 PREVNGAKPGIKKCNLGNGTMLTASFRKSAFSCPGNRKHVVTPDIVAETKWFKSPYVG-- 732
PR N +PG+ + + NG F + + PG R V+ P +V + SP G
Sbjct: 192 PRRTNSVRPGVAENLVKNG-----DFEEGPYIIPGTRWGVLIPSMVVDE---HSPLPGWM 243
Query: 733 VVSFKVLKQI 762
V S K +K I
Sbjct: 244 VESLKAVKYI 253
>08_02_1008 - 23508377-23508541,23508940-23509116
Length = 113
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 180 HTLPRVPVQESFSSEHGCKLFRNSFKQLLDSCGV 281
H + RV +E S+ GC + + +LD CGV
Sbjct: 51 HDIERVRNKEQLSTRVGCGRVHSIIENILDKCGV 84
>05_01_0120 - 828834-831143
Length = 769
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 626 PLVSANRRSVVLGIASTWSHQTLSLKPNGSSPHTLGLLASKS 751
P +S + S I+S +S + SL P+ SSP +LGL + S
Sbjct: 502 PFLSPSSLSSDSSISSKYSSDSPSLSPSTSSPTSLGLSPASS 543
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 616 TMLTASFRKSAFSCPGNRKHVVTPDIVAETKWFKSPY 726
T +F K+ F C +TPD +TK+ KSP+
Sbjct: 213 TKTLGNFVKATFDCLMKTYGFLTPDFWRDTKFVKSPF 249
>03_06_0704 +
35641774-35642031,35642122-35642446,35642546-35642699,
35643662-35643706,35644121-35644180,35644532-35644694,
35645356-35645717,35645985-35646303
Length = 561
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +1
Query: 394 LSICSSTSFIDIRPRKTAA--TVRYLPWRGSQAAIMFLASNICCVSSGTDRARYCWLPRE 567
LS SF+ ++P + ++PW S++C V+ G+D A W ++
Sbjct: 332 LSGQKKVSFLPVKPHTKGIINNINFMPW-----------SDVCFVTGGSDHAVILWQEKD 380
Query: 568 VNGAKPGIKKCNLGNGTMLTASF-RKSAFSCPGNRKHVVTPDIVA 699
+ + K + M A +KS G+ K +++ D+ A
Sbjct: 381 DSWNHKKVHKDLHSSAVMGVAGLQQKSTILSVGSDKRIISFDLAA 425
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,991,001
Number of Sequences: 37544
Number of extensions: 546031
Number of successful extensions: 1454
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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