Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c10
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    30   0.44 
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    27   2.3  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   3.1  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   3.1  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   4.1  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    27   4.1  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.4  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   5.4  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    26   7.1  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   9.4  

>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 522 GNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSN 406
           GNG++   +  D    +  +V+E +E  DGG S   T+N
Sbjct: 212 GNGYHDSSSMSDSRDASDNDVEEYNEDGDGGSSDAATAN 250


>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 742 CGRL*DRTTRPWTTC*NTRNAGESDQ 665
           CG L + TT  WTTC   ++   S+Q
Sbjct: 13  CGNLLESTTAQWTTCDQCQSVYPSEQ 38


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -1

Query: 423 YRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPT-XXXXXXXXXGDNTFEHNQYEQ 247
           Y P  N  SF+ S SYS   ++ SEE    P+  +  T            N++   Q+  
Sbjct: 281 YSPVLN--SFDDSDSYSSTDSELSEEAFLLPAQASRKTQKIHYINDNDPSNSYSSYQHSH 338

Query: 246 LRDFLPHN 223
           + DF+  N
Sbjct: 339 VHDFIHKN 346


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 480 QNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPS-YSQDAAQFSE 349
           + N+ N   NH  +DG + YRP  +      +PS Y +   Q S+
Sbjct: 455 ETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQSSQ 499


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -1

Query: 519 NGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAA 361
           NG++S+++ +D  +NN    + N  P       RP S++     SP + QDAA
Sbjct: 33  NGNSSYDSIKDSSKNNKDVAEVNEYPR------RPESSVSVVSNSP-HRQDAA 78


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 384 PSYSQDAAQFSEEYAGTPSGYNAPT 310
           P+   +A  F E  AG P G+NAP+
Sbjct: 366 PTMPSEAKGFIESGAGQPLGFNAPS 390


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -1

Query: 531 VTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFS 352
           V  G+   S    +    +N Y+   N   S GG++   +++  S+   PS + D A + 
Sbjct: 95  VRGGDTSYSRRHDDSSYSSNKYSTGGNDSYSSGGRNEDYSTSGGSYTTDPSRTDDTASYG 154

Query: 351 E 349
           +
Sbjct: 155 Q 155


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -1

Query: 519 NGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYA 340
           +G NS   S+D    N  ++ E HE ++   +   +SN  S +GS S S      S   +
Sbjct: 130 SGTNSEVVSDDEEDGNFASIPELHEDNEYHSNLATSSNPFS-DGSSSKSASLTASSAAAS 188

Query: 339 GTPSGYNAPT 310
            T S   A T
Sbjct: 189 PTVSFSPAST 198


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 630  PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTP 523
            P P       P PV  AK  PVP P   + P + TP
Sbjct: 1218 PVPTPSAGLPPVPVPTAKAPPVPAPS-SEAPSVSTP 1252


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 57  AIDIQEHLIPSHVNEHGRLITYYNYILFN 143
           A+DI ++L  +H+  +GR  T YN +L N
Sbjct: 165 ALDILDYLYKNHLEVYGR--TTYNIVLHN 191


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 97  FTCDGIKCSWISMAYERFY 41
           F CD +   +I   YERFY
Sbjct: 181 FLCDDVGLQYICQTYERFY 199


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = -1

Query: 585 VAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPS-DGGQSYRPTS 409
           V KPY   + +  +   +VT       H    D  Q  +Y  + +       G+SYRP +
Sbjct: 118 VVKPYNSVLGEFFRCKWVVTDPTVREDHTLDPDSSQLPTYKTEYSETTKFPLGKSYRPKA 177

Query: 408 N 406
           +
Sbjct: 178 S 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,342
Number of Sequences: 5004
Number of extensions: 71255
Number of successful extensions: 213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)