Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c10
         (795 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    35   0.003
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            28   0.38 
AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.           26   1.5  
AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    24   4.7  
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    24   6.2  

>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 34.7 bits (76), Expect = 0.003
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVP 538
           PYP+++++  P+PV V K + VPVP+   VP
Sbjct: 231 PYPIEVEK--PFPVEVLKKFEVPVPKPYPVP 259



 Score = 31.1 bits (67), Expect = 0.041
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 624 PVKIKERVPYPVHVAKPYPVPVPQIIKVP 538
           PV      PYP+ V KP+PV V +  +VP
Sbjct: 223 PVPYTVEKPYPIEVEKPFPVEVLKKFEVP 251



 Score = 28.7 bits (61), Expect = 0.22
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 630 PYPVKIKERVPYPVHVAKPYPVPV 559
           P+PV++ ++   PV   KPYPVPV
Sbjct: 239 PFPVEVLKKFEVPV--PKPYPVPV 260



 Score = 25.8 bits (54), Expect = 1.5
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 603 VPYPVHVAKPYPVPVPQIIKVPHIV 529
           VP PV      PVP P  I VPH V
Sbjct: 166 VPVPVFQKVGVPVPHPVPIAVPHYV 190



 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIV 529
           P+ VK+    PYP+ V    P+ +P    +P ++
Sbjct: 187 PHYVKVYIPQPYPLQVNVEQPIKIPIYKVIPKVI 220



 Score = 25.4 bits (53), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 630 PYPVKIKERVPYPVHVAKPYP--VPVPQIIKVP 538
           P+PV I       V++ +PYP  V V Q IK+P
Sbjct: 179 PHPVPIAVPHYVKVYIPQPYPLQVNVEQPIKIP 211



 Score = 23.4 bits (48), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 624 PVKIKERVPYPVHVAKPYPVPVPQIIKV 541
           PV + ++V  PV    P P+ VP  +KV
Sbjct: 167 PVPVFQKVGVPV--PHPVPIAVPHYVKV 192


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 603 VPYPVHVAKPYPVPVP 556
           VPYP+ +  P P+PVP
Sbjct: 630 VPYPIIIPLPLPIPVP 645


>AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.
          Length = 165

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
 Frame = -1

Query: 591 VHVAKPYPVPVPQIIKVPHIV----TPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQS 424
           VH ++P   PVP ++ +P       +  +GH+   +  D V          H P     S
Sbjct: 25  VHPSQP---PVPMLVPIPSRTASTGSASSGHSGSSSLYDRVPREHATSSPYHAPPSPANS 81

Query: 423 YRPTSNIHSFEGSPSYS 373
           +      HS   S S S
Sbjct: 82  HYEPMECHSAVNSSSNS 98


>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 496 CFMTVM-SIPRCYNMWNFNNLRYR-NGVWFSDVHWIRHPFLYFHWIR 630
           CF+  + S PR Y    F + R + N +W      +R P   F W+R
Sbjct: 415 CFLICLFSFPRYY----FIDFRVKPNSLWGLPGDQVRSPLACFEWLR 457


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 17/66 (25%), Positives = 24/66 (36%)
 Frame = -1

Query: 576 PYPVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHS 397
           P P PVP +  VP  +   N  N+      G Q  S         + G   Y   S   S
Sbjct: 187 PKPAPVPIVTPVPRSLRTNNVLNT-SIPNHGSQMQSRKRTNAANATAGAAHYSKKSTTVS 245

Query: 396 FEGSPS 379
           ++  P+
Sbjct: 246 YQPVPT 251


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 844,313
Number of Sequences: 2352
Number of extensions: 18880
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83576403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)