Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c10
(795 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK001021-1|BAA91470.1| 268|Homo sapiens protein ( Homo sapiens ... 33 1.6
U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding prot... 32 2.7
BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II... 32 2.7
BC027937-1|AAH27937.1| 530|Homo sapiens RAI2 protein protein. 32 2.7
AF136587-1|AAD33688.1| 530|Homo sapiens retinoic acid-induced p... 32 2.7
AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein. 32 2.7
Z93242-2|CAI42725.1| 530|Homo sapiens retinoic acid induced 2 p... 31 6.3
BC117331-1|AAI17332.1| 346|Homo sapiens selenoprotein V protein. 30 8.4
AY324825-1|AAP85542.1| 346|Homo sapiens selenoprotein V protein. 30 8.4
>AK001021-1|BAA91470.1| 268|Homo sapiens protein ( Homo sapiens
cDNA FLJ10159 fis, clone HEMBA1003528. ).
Length = 268
Score = 32.7 bits (71), Expect = 1.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 603 VPYPVHVAKPYPVPVPQIIKVPHI 532
VPYPV V P P+P+P I +PH+
Sbjct: 122 VPYPVIVPLPVPIPIP--IPIPHV 143
>U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding protein
RBP56 protein.
Length = 592
Score = 31.9 bits (69), Expect = 2.7
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 1/114 (0%)
Frame = -1
Query: 519 NGHNSHEASEDGVQNNSYNVQENHEPSDGGQS-YRPTSNIHSFEGSPSYSQDAAQFSEEY 343
+G++S+ S+ G + SY EN + S Q Y + E S S A + +
Sbjct: 51 SGYSSYGQSQSGY-SQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPD 109
Query: 342 AGTPSGYNAPTXXXXXXXXXGDNTFEHNQYEQLRDFLPHNQGAAHSDGGNSYYH 181
G Y+ + E + Y+Q D NQ + HS N +H
Sbjct: 110 YGQQDSYDQQSGYDQHQGSYD----EQSNYDQQHDSYSQNQQSYHSQRENYSHH 159
>BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 68kD
protein.
Length = 592
Score = 31.9 bits (69), Expect = 2.7
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 1/114 (0%)
Frame = -1
Query: 519 NGHNSHEASEDGVQNNSYNVQENHEPSDGGQS-YRPTSNIHSFEGSPSYSQDAAQFSEEY 343
+G++S+ S+ G + SY EN + S Q Y + E S S A + +
Sbjct: 51 SGYSSYGQSQSGY-SQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPD 109
Query: 342 AGTPSGYNAPTXXXXXXXXXGDNTFEHNQYEQLRDFLPHNQGAAHSDGGNSYYH 181
G Y+ + E + Y+Q D NQ + HS N +H
Sbjct: 110 YGQQDSYDQQSGYDQHQGSYD----EQSNYDQQHDSYSQNQQSYHSQRENYSHH 159
>BC027937-1|AAH27937.1| 530|Homo sapiens RAI2 protein protein.
Length = 530
Score = 31.9 bits (69), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 603 VPYPVHVAKPYPVPVPQIIKVP 538
VPYPV V P PVP+P I VP
Sbjct: 232 VPYPVIVPLPVPVPIPIPIPVP 253
>AF136587-1|AAD33688.1| 530|Homo sapiens retinoic acid-induced
protein protein.
Length = 530
Score = 31.9 bits (69), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 603 VPYPVHVAKPYPVPVPQIIKVP 538
VPYPV V P PVP+P I VP
Sbjct: 232 VPYPVIVPLPVPVPIPIPIPVP 253
>AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein.
Length = 592
Score = 31.9 bits (69), Expect = 2.7
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 1/114 (0%)
Frame = -1
Query: 519 NGHNSHEASEDGVQNNSYNVQENHEPSDGGQS-YRPTSNIHSFEGSPSYSQDAAQFSEEY 343
+G++S+ S+ G + SY EN + S Q Y + E S S A + +
Sbjct: 51 SGYSSYGQSQSGY-SQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPD 109
Query: 342 AGTPSGYNAPTXXXXXXXXXGDNTFEHNQYEQLRDFLPHNQGAAHSDGGNSYYH 181
G Y+ + E + Y+Q D NQ + HS N +H
Sbjct: 110 YGQQDSYDQQSGYDQHQGSYD----EQSNYDQQHDSYSQNQQSYHSQRENYSHH 159
>Z93242-2|CAI42725.1| 530|Homo sapiens retinoic acid induced 2
protein.
Length = 530
Score = 30.7 bits (66), Expect = 6.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 603 VPYPVHVAKPYPVPVPQIIKVP 538
VPYPV V P PVP+P I +P
Sbjct: 232 VPYPVIVPLPVPVPIPIPIPMP 253
>BC117331-1|AAI17332.1| 346|Homo sapiens selenoprotein V protein.
Length = 346
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTP 523
P P I VP PV V P PVP P P + P
Sbjct: 88 PAPAWIPTPVPTPVPVRNPTPVPTPARTLTPPVRVP 123
>AY324825-1|AAP85542.1| 346|Homo sapiens selenoprotein V protein.
Length = 346
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTP 523
P P I VP PV V P PVP P P + P
Sbjct: 88 PAPAWIPTPVPTPVPVRNPTPVPTPARTLTPPVRVP 123
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,139,651
Number of Sequences: 237096
Number of extensions: 2494218
Number of successful extensions: 5883
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5809
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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