Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c10
(795 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 34 0.13
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 34 0.13
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z66565-7|CAE17924.1| 287|Caenorhabditis elegans Hypothetical pr... 33 0.18
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr... 32 0.41
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical... 32 0.41
AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical ... 32 0.54
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 31 0.72
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 31 0.72
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 31 0.72
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF002198-10|AAF99937.1| 471|Caenorhabditis elegans Hypothetical... 31 1.3
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 29 2.9
Z19153-4|CAA79548.1| 525|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p... 29 5.1
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p... 29 5.1
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 28 6.7
AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical ... 28 6.7
Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z71262-10|CAA95816.4| 436|Caenorhabditis elegans Hypothetical p... 28 8.9
L12018-2|AAK68341.1| 525|Caenorhabditis elegans G protein regul... 28 8.9
AY037801-1|AAK94766.1| 436|Caenorhabditis elegans GLY-19 protein. 28 8.9
AY037799-1|AAK94764.1| 352|Caenorhabditis elegans GLY-19 protein. 28 8.9
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGV 481
P P + E P PV +++P P PVP +++ P P N + + DGV
Sbjct: 1641 PEPEPVPE--PEPVVISEPVPEPVPIVVEEPPKEPPKPRRNRRKTNPDGV 1688
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGV 481
P P + E P PV +++P P PVP +++ P P N + + DGV
Sbjct: 1641 PEPEPVPE--PEPVVISEPVPEPVPIVVEEPPKEPPKPRRNRRKTNPDGV 1688
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGV 481
P P + E P PV +++P P PVP +++ P P N + + DGV
Sbjct: 462 PEPEPVPE--PEPVVISEPVPEPVPIVVEEPPKEPPKPRRNRRKTNPDGV 509
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGV 481
P P + E P PV +++P P PVP +++ P P N + + DGV
Sbjct: 462 PEPEPVPE--PEPVVISEPVPEPVPIVVEEPPKEPPKPRRNRRKTNPDGV 509
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGV 481
P P + E P PV +++P P PVP +++ P P N + + DGV
Sbjct: 1641 PEPEPVPE--PEPVVISEPVPEPVPIVVEEPPKEPPKPRRNRRKTNPDGV 1688
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGV 481
P P + E P PV +++P P PVP +++ P P N + + DGV
Sbjct: 1641 PEPEPVPE--PEPVVISEPVPEPVPIVVEEPPKEPPKPRRNRRKTNPDGV 1688
>Z66565-7|CAE17924.1| 287|Caenorhabditis elegans Hypothetical
protein T04F8.9 protein.
Length = 287
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Frame = -1
Query: 627 YPVKIKERVPYPVHVAK------PYPVPVPQII--KVPHIVTPGNGHN--SHEASEDGVQ 478
+ +++ +R P P ++ + P+P+P PQII ++ P + +N S++ S D ++
Sbjct: 80 HDLQLTDRPPLPPYLPETPTFIPPFPIPPPQIIMESTNILIQPPSVNNPPSYDESAD-IE 138
Query: 477 NNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQF 355
+ N P+ ++ +NI SF P YS + F
Sbjct: 139 DRRITDNSNAPPAYNPTNFVSDNNIASFSPPPYYSPPSPFF 179
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVP 538
P PV + VP PV V P P+P+P + VP
Sbjct: 10 PAPVPVPAPVPQPVPVPMPMPMPMPMPMPVP 40
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVP 538
P P+ I VP P V +P PVP+P + +P
Sbjct: 4 PIPIPIPAPVPVPAPVPQPVPVPMPMPMPMP 34
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVP 538
P P + + VP P+ + P P+P+P + VP
Sbjct: 14 PVPAPVPQPVPVPMPMPMPMPMPMPVPVPVP 44
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVP 538
P P+ I P PV P PVPVP + +P
Sbjct: 2 PPPIPIPIPAPVPVPAPVPQPVPVPMPMPMP 32
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVP 538
P PV P PV + P P+P+P + VP
Sbjct: 12 PVPVPAPVPQPVPVPMPMPMPMPMPMPVPVP 42
>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
protein F40F12.5 protein.
Length = 1144
Score = 32.3 bits (70), Expect = 0.41
Identities = 22/86 (25%), Positives = 30/86 (34%)
Frame = -1
Query: 576 PYPVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHS 397
P P P +II V NS N+Y+ P +Y SN HS
Sbjct: 363 PKPAPRERIIPVSRQQPEIEQRNSRSMKPSEPDYNTYSTHPPRPPPSSSMNYPSMSNTHS 422
Query: 396 FEGSPSYSQDAAQFSEEYAGTPSGYN 319
+ S S S Q ++ P+ N
Sbjct: 423 LQPSRSKSVQTIQRNQFVRQNPAERN 448
>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
protein Y67A10A.3 protein.
Length = 1237
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 624 PVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHE 445
P+ + Y V + K Y +PQI++ + P ++ S +Q N+ N+ NH+
Sbjct: 677 PIDASDFAKYDVAIVKAYN-SLPQILQYFQEMFPVRNQKLNKPSHP-MQTNASNLVSNHD 734
Query: 444 PSDGGQS 424
D GQS
Sbjct: 735 DGDEGQS 741
>AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical
protein Y39C12A.8 protein.
Length = 365
Score = 31.9 bits (69), Expect = 0.54
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 1/116 (0%)
Frame = -1
Query: 525 PGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGS-PSYSQDAAQFSE 349
P NG + + S +NS N Q NH+ + +S P SN ++F + Y ++ + FS
Sbjct: 127 PSNGKRNEQNSSFKQDHNSKNHQSNHQKTKNKKS-NPYSNQNNFNNTRKDYREEKSGFSW 185
Query: 348 EYAGTPSGYNAPTXXXXXXXXXGDNTFEHNQYEQLRDFLPHNQGAAHSDGGNSYYH 181
+ N + ++E+ D ++ + N +H
Sbjct: 186 NTGSADDYEDFVYRNYQSYQQQQQNQYARRRHEEYTDGFKYSSSSNPHSTSNEPFH 241
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = -1
Query: 600 PYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSY 421
PY H P+P +I+ P P N N + + GVQ + VQ + E +
Sbjct: 43 PYGHHAPSHAPMPSQKILPPPTTSAPSNSGN-NSINYMGVQMYNNPVQSHEEKEGSEDAM 101
Query: 420 RPTSNI 403
TSNI
Sbjct: 102 STTSNI 107
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = -1
Query: 600 PYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSY 421
PY H P+P +I+ P P N N + + GVQ + VQ + E +
Sbjct: 104 PYGHHAPSHAPMPSQKILPPPTTSAPSNSGN-NSINYMGVQMYNNPVQSHEEKEGSEDAM 162
Query: 420 RPTSNI 403
TSNI
Sbjct: 163 STTSNI 168
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = -1
Query: 600 PYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSY 421
PY H P+P +I+ P P N N + + GVQ + VQ + E +
Sbjct: 68 PYGHHAPSHAPMPSQKILPPPTTSAPSNSGN-NSINYMGVQMYNNPVQSHEEKEGSEDAM 126
Query: 420 RPTSNI 403
TSNI
Sbjct: 127 STTSNI 132
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.3
Identities = 29/91 (31%), Positives = 34/91 (37%)
Frame = -1
Query: 597 YPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYR 418
Y A P P P P P V+ G G++ E S G +SY+ S GG Y
Sbjct: 295 YSAPAAAPPPPPPPPPPPAPAPVSSGGGYS--EQSSGGGGGSSYSGGGEASSSSGG-GYS 351
Query: 417 PTSNIHSFEGSPSYSQDAAQFSEEYAGTPSG 325
S GS SYS S G SG
Sbjct: 352 GGGESSSSGGS-SYSSGGDSSSSSGGGYSSG 381
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.3
Identities = 29/91 (31%), Positives = 34/91 (37%)
Frame = -1
Query: 597 YPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYR 418
Y A P P P P P V+ G G++ E S G +SY+ S GG Y
Sbjct: 295 YSAPAAAPPPPPPPPPPPAPAPVSSGGGYS--EQSSGGGGGSSYSGGGEASSSSGG-GYS 351
Query: 417 PTSNIHSFEGSPSYSQDAAQFSEEYAGTPSG 325
S GS SYS S G SG
Sbjct: 352 GGGESSSSGGS-SYSSGGDSSSSSGGGYSSG 381
>AF002198-10|AAF99937.1| 471|Caenorhabditis elegans Hypothetical
protein F35F10.12 protein.
Length = 471
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/63 (34%), Positives = 26/63 (41%)
Frame = -1
Query: 630 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQEN 451
PYPV PYP V PYP K +V P S+E S G + N EN
Sbjct: 393 PYPVG----PPYPSDVPAPYPSGDEP--KDGTVVVPSAPPLSYEESMYGTEGTELNTDEN 446
Query: 450 HEP 442
+P
Sbjct: 447 AQP 449
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 624 PVKIKERVPYPVHVAKPYPVPVP 556
PV + +VP P+ V P PVP P
Sbjct: 157 PVPVPVQVPVPIRVPVPVPVPTP 179
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 624 PVKIKERVPYPVHVAKPYPVPVPQIIKVP 538
P + + VP PV V P P+ VP + VP
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVP 177
>Z19153-4|CAA79548.1| 525|Caenorhabditis elegans Hypothetical
protein C38C10.4 protein.
Length = 525
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 292 ITVIAICWSVIPRRRPCIFFTKLGCILTITGAAFK 396
+ IA C + +RR +F LG +LTI ++FK
Sbjct: 309 LLTIAKCLIALGKRRQAAYFIILGSVLTINQSSFK 343
>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 618 KIKERVPYPVHVAKPYPVPVPQIIKV 541
K+KE P P +P PVPVP +K+
Sbjct: 770 KVKEPEPEPEEYEQPTPVPVPVPVKM 795
>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 618 KIKERVPYPVHVAKPYPVPVPQIIKV 541
K+KE P P +P PVPVP +K+
Sbjct: 768 KVKEPEPEPEEYEQPTPVPVPVPVKM 793
>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 618 KIKERVPYPVHVAKPYPVPVPQIIKV 541
K+KE P P +P PVPVP +K+
Sbjct: 770 KVKEPEPEPEEYEQPTPVPVPVPVKM 795
>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 618 KIKERVPYPVHVAKPYPVPVPQIIKV 541
K+KE P P +P PVPVP +K+
Sbjct: 768 KVKEPEPEPEEYEQPTPVPVPVPVKM 793
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 75 HLIPSHVNEHGRLITYYNYIL 137
H++ H+ +HG+LIT Y +L
Sbjct: 796 HILKGHIQKHGQLITEYPLVL 816
>AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical
protein C24A1.2a protein.
Length = 420
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 570 PVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDG 433
P P P ++ +P +P N +S+ +S+ NN+ N EN E DG
Sbjct: 8 PRPEPLLLVLPTATSPLNISSSNISSKSSRINNN-NDNENDEEDDG 52
>Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical
protein K02B12.9 protein.
Length = 118
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = -1
Query: 525 PGNGHNSHE----ASEDGVQNNSY--NVQENHEPSDGGQSYRPTSNIHSFEGSPSY 376
P H+S+E + D N Y + Q +H+P GG Y + + GS +Y
Sbjct: 59 PSYYHDSYEPKYNSGHDQKSGNDYYSSYQPSHQPYYGGSYYNEQPKYNDYHGSQNY 114
>Z71262-10|CAA95816.4| 436|Caenorhabditis elegans Hypothetical
protein F22D6.12 protein.
Length = 436
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 544 FNNLRYRNGVWFSDVHWIRHPFLYFHWIRHWNFNS--NCLCXFDHFHRRFWYFNMLSRV 714
F NL FS+VH+++ P + W H +S +CL H + YF LS V
Sbjct: 155 FQNLLREVSTCFSNVHFMKRPPI--SWGSHEIIDSVYDCLEFLSHLETDWRYFQYLSGV 211
>L12018-2|AAK68341.1| 525|Caenorhabditis elegans G protein
regulator protein 1 protein.
Length = 525
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 292 ITVIAICWSVIPRRRPCIFFTKLGCILTITGAAFK 396
+ IA C + +RR +F LG +LTI +FK
Sbjct: 309 LLTIAKCLIALGKRRQAAYFIILGSVLTINQNSFK 343
>AY037801-1|AAK94766.1| 436|Caenorhabditis elegans GLY-19 protein.
Length = 436
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 544 FNNLRYRNGVWFSDVHWIRHPFLYFHWIRHWNFNS--NCLCXFDHFHRRFWYFNMLSRV 714
F NL FS+VH+++ P + W H +S +CL H + YF LS V
Sbjct: 155 FQNLLREVSTCFSNVHFMKRPPI--SWGSHEIIDSVYDCLEFLSHLETDWRYFQYLSGV 211
>AY037799-1|AAK94764.1| 352|Caenorhabditis elegans GLY-19 protein.
Length = 352
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 544 FNNLRYRNGVWFSDVHWIRHPFLYFHWIRHWNFNS--NCLCXFDHFHRRFWYFNMLSRV 714
F NL FS+VH+++ P + W H +S +CL H + YF LS V
Sbjct: 71 FQNLLREVSTCFSNVHFMKRPPI--SWGSHEIIDSVYDCLEFLSHLETDWRYFQYLSGV 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,161,443
Number of Sequences: 27780
Number of extensions: 411638
Number of successful extensions: 1552
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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