Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c10
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   10.0 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   10.0 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   10.0 

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 135 LFNKTLY*NLKQENTNGNNY 194
           L NKT++ N    N N NNY
Sbjct: 85  LSNKTIHNNNNYNNNNYNNY 104


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 135 LFNKTLY*NLKQENTNGNNY 194
           L NKT++ N    N N NNY
Sbjct: 85  LSNKTIHNNNNYNNNNYNNY 104



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 117 TYYNYILFNKTLY*NLKQENTNGNNY 194
           T +N   +N   Y N    N N NNY
Sbjct: 89  TIHNNNNYNNNNYNNYNYNNNNYNNY 114



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 529 YNMWNFNNLRYRN 567
           YN +N+NN  Y N
Sbjct: 101 YNNYNYNNNNYNN 113


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 532 NMWNFNNLRYRNG 570
           N+W F  L Y+NG
Sbjct: 41  NLWRFPYLCYKNG 53


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 532 NMWNFNNLRYRNG 570
           N+W F  L Y+NG
Sbjct: 94  NLWRFPYLCYKNG 106


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 121 YVINLPCSFTCDGIKCSWISMAYER 47
           Y+ N        G KC+W   +Y R
Sbjct: 55  YIYNPRYPLPYSGSKCTWTITSYHR 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,084
Number of Sequences: 438
Number of extensions: 5423
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)