Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c09
         (818 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CPV5 Cluster: Chromosome undetermined scaffold_23, wh...    34   5.0  

>UniRef50_A0CPV5 Cluster: Chromosome undetermined scaffold_23, whole
            genome shotgun sequence; n=3; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_23, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1966

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 247  CTK*TSQCFLTRSRQCSRCRFTSRIRRARCSG--KNTVK*VAANSVYNS 107
            C   TS C +  + QCS+C+  S ++ ++CS    N  +  +ANS Y S
Sbjct: 1768 CVACTSDCLVCTASQCSQCQAGSCLKNSQCSACPSNCPQCQSANSAYCS 1816


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,106,465
Number of Sequences: 1657284
Number of extensions: 10460513
Number of successful extensions: 24075
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 23345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24068
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 71200899835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)