Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c09
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.4  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   7.4  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.8  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +3

Query: 27  IYRSTYHFGVSVALWRLYRDNFYFARLLLYT--LFAATHFTVFLPEQRARRI---RLVNR 191
           IY   Y F + +++W  +R+ FY     +YT  L+      VF P+    ++    +++ 
Sbjct: 586 IYSLAYAFCLGISVWTPWRELFYRVPRRIYTKLLYTDDMEIVFKPKVLISQVWNAIIISM 645

Query: 192 QREHCRDRVR 221
            REH   R +
Sbjct: 646 YREHLISRTQ 655


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 597 NQTRNRNESERIASRREGRKKYHGKNQ 517
           N +RN NE+E I +R   + K H K +
Sbjct: 819 NSSRNGNEAEDIPARDRKKHKIHDKGK 845


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 46  ILVFLWLCGDCIVTIFISRVYY 111
           IL+  W+    +V IFIS +Y+
Sbjct: 379 ILIIAWIIETALVAIFISNLYH 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,102
Number of Sequences: 5004
Number of extensions: 43704
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)