Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c09
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U50307-4|AAA92305.1|  413|Caenorhabditis elegans Hypothetical pr...    29   5.3  
L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding pro...    29   5.3  
Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical
           protein M02D8.3 protein.
          Length = 915

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 654 VSVRHQVPSQEYFRPAAVINQTRNRNESERIASRREGRKKYHGKNQ 517
           V+++   P  +   P  +I QT   N+SE+ A RR  R+K    N+
Sbjct: 817 VTLKDSFPFWKQANPVGLIEQT---NQSEKTAERRRSRRKTRNANR 859


>U50307-4|AAA92305.1|  413|Caenorhabditis elegans Hypothetical
           protein F43H9.3 protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 1   NCHLQIRYKFTDQLTILVFLWLCGDC-IVTIFISRVYYCIRYSLLLTLRYF 150
           N HL   YK  D    L+FLWL   C  + +  S+      Y LLL + +F
Sbjct: 197 NTHLMKMYKLCDHRFTLLFLWLRAICDKLEVRNSKYGLLSSYHLLLLVVHF 247


>L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding
           protein protein.
          Length = 593

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = -3

Query: 573 SERIASRREGRKKYHGKNQV--RPPVGCREKNSR 478
           +++ A +++GR+K +GK  +  +PP G ++K SR
Sbjct: 558 AQQRAKQKDGRQKQYGKKSMGPKPPNGSQKKKSR 591


>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 699 NNSFMGQHFTTHKVKFILSFFTVPS*FLL 785
           N+S++G H  +  + F  SF+T+P  FLL
Sbjct: 9   NSSYVGIHGNSTFINFEFSFYTLPMLFLL 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,804,057
Number of Sequences: 27780
Number of extensions: 254519
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)