Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c06
(269 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 2.5
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 3.2
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 24 4.3
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 24 4.3
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 23 5.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 5.7
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 23 5.7
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 23 7.5
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 23 7.5
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 23 7.5
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 9.9
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 9.9
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 24.6 bits (51), Expect = 2.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 80 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 199
CK Q+S +V+ G+GA+M D+ ++ + + N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 24.2 bits (50), Expect = 3.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 90 KSLHQHIQLLHSNYVTQW 37
+S H +I L+SNY T W
Sbjct: 166 QSAHPYISSLNSNYPTTW 183
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 23.8 bits (49), Expect = 4.3
Identities = 7/30 (23%), Positives = 20/30 (66%)
Frame = -3
Query: 96 SCKSLHQHIQLLHSNYVTQWTISIVNLKMV 7
+ KSL H++ + N++ +W + +++++ V
Sbjct: 89 AAKSLITHLEEIKVNFMREWELKMISVEGV 118
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 23.8 bits (49), Expect = 4.3
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 196 IVHQS-VHLRIVVRSVDLHLRSFARAACHQHNGAIL*ILASTYTAVTLK 53
I+H S VH+ + S D+ + ++ +A H H + AST K
Sbjct: 63 IIHDSAVHIAPLPSSCDIDFKDYSTSAFHLHFSPLTPNHASTEAVSNFK 111
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 23.4 bits (48), Expect = 5.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 80 CKDLQDSTVVLVARCSGKGAEMQV 151
C+ +QD+ V++V +G G Q+
Sbjct: 106 CQQIQDNRVIVVVGETGSGKSTQI 129
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.4 bits (48), Expect = 5.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 191 PPVCSPPDCRPICGPASPLLCQSSVP 114
PPV +PP P P+ P S+P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 23.4 bits (48), Expect = 5.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 137 LLCQSSVPPTQR 102
LLCQ+S+ PTQR
Sbjct: 108 LLCQASLNPTQR 119
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 23.0 bits (47), Expect = 7.5
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 137 LLCQSSVPPTQR--CYPVNPCINIYSCYTQIM*RNGR 33
LLC P R +P+NP + SC+ + RN +
Sbjct: 88 LLCYFETPFFMRKELFPLNPHLKYTSCFPLLPLRNDK 124
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 23.0 bits (47), Expect = 7.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 191 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIY 69
PP + P +C + L C +S P T R + +N I ++
Sbjct: 71 PPTLTGPTSNRVCNALALLQCIASHPET-RIHFLNAHITLF 110
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 23.0 bits (47), Expect = 7.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 135 PLPEQRATNTTVLSCKSLHQHIQ 67
PLPE+ + + C L+ H+Q
Sbjct: 395 PLPEEEMSKLHIERCARLYPHMQ 417
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 161 DDNPEVNRLVDNNPFFTFLI 220
D N +NR+VD P ++L+
Sbjct: 398 DQNQLINRIVDKLPDLSYLV 417
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 84 RIYRIAPLCWWHAALAK 134
R Y PLC WH + A+
Sbjct: 102 RTYLEVPLCRWHISQAR 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,066,469
Number of Sequences: 5004
Number of extensions: 19250
Number of successful extensions: 64
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -