Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c05
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 34 0.047
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 31 0.25
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 30 0.58
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 29 1.0
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 29 1.0
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 1.0
Z82278-10|CAC15860.2| 390|Caenorhabditis elegans Hypothetical p... 29 1.8
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 1.8
AL132943-14|CAC14395.2| 390|Caenorhabditis elegans Hypothetical... 29 1.8
AF106582-4|AAC78219.1| 456|Caenorhabditis elegans Hypothetical ... 28 2.3
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 28 2.3
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 28 3.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 3.1
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 27 5.4
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 27 7.1
Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical pr... 26 9.4
U80437-10|AAN84839.1| 656|Caenorhabditis elegans Hypothetical p... 26 9.4
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 33.9 bits (74), Expect = 0.047
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 342 CPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPC 229
C P C P C+P C PL Q+ VP +C P PC
Sbjct: 372 CVPSCMPA-CQPSCTNPVPLTTQAPVPVVNQCIP--PC 406
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 31.5 bits (68), Expect = 0.25
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Frame = -2
Query: 339 PPVCSPPDCRPI-------CGPASPLLCQSSVPPTQRCYPVNPCINIYSC 211
P C+ P+CRP+ CG PL ++ + T C P++ C Y C
Sbjct: 1255 PVKCTTPECRPVAKCIPNMCGTGEPLALENHLLAT--CSPISSCPAGYHC 1302
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 30.7 bits (66), Expect = 0.44
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -2
Query: 345 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 241
Y P +P C+P C PA C P +C P
Sbjct: 119 YTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVP 153
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 30.3 bits (65), Expect = 0.58
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -2
Query: 345 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 241
Y P +P C+P C PA C P +C P
Sbjct: 119 YTPTTPAPVQCQPSCMPACEQSCVVQTPAPVQCVP 153
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 327 SPPDCRPICGPASPLLCQSSVPPTQRCYP 241
+P C+P C PA C + P T +C P
Sbjct: 124 APVQCQPSCMPACEQSCVAPAPVTVQCVP 152
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 327 SPPDCRPICGPASPLLCQSSVPPTQRCYP 241
+P C+P C PA C + P T +C P
Sbjct: 125 APVQCQPSCMPACEQSCVAPAPVTVQCVP 153
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 330 CSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPC 229
C PP+ +P C C +SVPP R P PC
Sbjct: 200 CCPPE-QPCCPELKLDNCLASVPPCLRACPSCPC 232
>Z82278-10|CAC15860.2| 390|Caenorhabditis elegans Hypothetical
protein Y116F11B.2 protein.
Length = 390
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 345 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCY-PVNPCINIYSC 211
+C P+ PDC + P++ C + T Y V+ CI ++C
Sbjct: 292 FCLPMVYNPDCYGVDNPSNTDWCYTEAEVTVNYYRDVDTCIAAFTC 337
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -2
Query: 336 PVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 211
PVC PP P P +C PP C P P + SC
Sbjct: 52 PVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSC 93
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 339 PPVCSPPDCRPI-CGPASPLLCQSSVP 262
PP+C PP P+ C P P + + S P
Sbjct: 68 PPICPPPPPPPMPCPPPPPPMPRPSCP 94
>AL132943-14|CAC14395.2| 390|Caenorhabditis elegans Hypothetical
protein Y116F11B.2 protein.
Length = 390
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 345 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCY-PVNPCINIYSC 211
+C P+ PDC + P++ C + T Y V+ CI ++C
Sbjct: 292 FCLPMVYNPDCYGVDNPSNTDWCYTEAEVTVNYYRDVDTCIAAFTC 337
>AF106582-4|AAC78219.1| 456|Caenorhabditis elegans Hypothetical
protein W05F2.6 protein.
Length = 456
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 25 SQFK*LSSYKTGNFSFAIQLLEY--VVMKTIS*KENPSVSGKE 147
S F+ L YK N AI LL+Y + S + NP+V GKE
Sbjct: 395 SDFQLLYDYKGNNLRSAIVLLKYPDAINLCNSIRSNPTVFGKE 437
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 28.3 bits (60), Expect = 2.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 336 PVCSPPDCRPICGPASPLLCQSSVP 262
P C PP P C P++P++ P
Sbjct: 121 PACPPPCFGPACAPSAPIIVNGPPP 145
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -2
Query: 336 PVCSPPDCRPICGPASPLLCQSSVP 262
P C PP P C P +P++ P
Sbjct: 93 PACPPPCFGPACAPPAPIIVNGPPP 117
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -2
Query: 336 PVCSPPDCRPICGPASPLLCQSSVP 262
P C PP P C P +P++ P
Sbjct: 65 PACPPPCFGPACVPLAPIIVNGPPP 89
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Frame = -2
Query: 342 CPPVCSPPDCRPICGPASPLLC----QSSV---PPTQRC 247
CP +CS +C P C P C Q SV PP RC
Sbjct: 224 CPSICSQANCIPQCMPRCLPTCIQQIQISVPLPPPAPRC 262
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Frame = -2
Query: 351 MGYCPPVC-----SPPDCRPICGPASPLLCQSSVPPT--QRCYPV 238
M C P C P +C P C P+ C V P+ Q+C PV
Sbjct: 112 MPLCLPACINAIQGPTECAPQCMPSCSSNCIQQVFPSCPQQCQPV 156
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 315 CRPICGPASPLLCQSSVPPTQRCYP 241
C P C P+ C S+ P Q+CYP
Sbjct: 306 CLPACMPSCTSSCVQSMCP-QQCYP 329
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 339 PPVCSPPDCRPICGPASPLLC-QSSVPPTQRCYPVNPC 229
PP C PP P+C P PL C + P Q C P C
Sbjct: 27 PPPCPPPP-PPMCAP-PPLPCPPPPICPPQFCPPPPMC 62
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 345 YCPPVCSPPDCRPICGPASPLLCQSSVPP 259
+CPP PP C P P P +C PP
Sbjct: 55 FCPP---PPMCPPPPPPPPPPMCPPPPPP 80
>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
protein C45G3.1 protein.
Length = 1186
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 194 NAMDDFYSEFKNVLQVSFPETDGFSFQDIVFITTYSRSWI 75
N +DD +SE L T +F + FI TY +S+I
Sbjct: 304 NCLDDVFSELTKELLTGSSATFKKAFAKVGFIPTYRQSFI 343
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -2
Query: 342 CPPVCSP--PDCRPICGPA-SPLLCQSSVPPTQRCYPVNPCINI 220
CPP +P P C P P SPL+C P P NPC I
Sbjct: 110 CPPPPAPAAPCCPPPPPPTPSPLVCCKQAP-----VPENPCCQI 148
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 342 CPPVC-SPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 232
C P C P C P+C P P C + PP C V P
Sbjct: 48 CAPACPQAPSC-PVCPPPQP--CPA--PPAAYCPQVQP 80
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 342 CPPVCSPPDCRPICGPASPLLCQSSVPPTQR 250
C P C P + C PA +C SS Q+
Sbjct: 178 CMPACLPSCVQSSCAPACQPMCSSSCVQQQQ 208
>Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical
protein F49C5.9 protein.
Length = 376
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 298 TCISAPLPEQRATNTTVLSCKSLHQHIQLLHSNY 197
TC S P P R+ N+T S S+ +HI H NY
Sbjct: 339 TCTS-PSPHPRSANSTSSSSMSVIEHIMRRH-NY 370
>U80437-10|AAN84839.1| 656|Caenorhabditis elegans Hypothetical
protein C43E11.11 protein.
Length = 656
Score = 26.2 bits (55), Expect = 9.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -3
Query: 311 VRSVDLHLRSFARAACHQH 255
+ +D+H+ +RA CH H
Sbjct: 483 INHIDMHMAHVSRAVCHSH 501
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,295,515
Number of Sequences: 27780
Number of extensions: 203277
Number of successful extensions: 768
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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