Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c04
         (635 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9Y5V3 Cluster: Melanoma-associated antigen D1; n=25; E...    36   0.82 
UniRef50_A2X8G6 Cluster: Putative uncharacterized protein; n=2; ...    35   1.4  
UniRef50_UPI00003829DC Cluster: hypothetical protein Magn0300188...    35   1.9  
UniRef50_Q44S92 Cluster: Putative uncharacterized protein; n=4; ...    35   1.9  
UniRef50_Q566A4 Cluster: Putative uncharacterized protein; n=1; ...    34   3.3  
UniRef50_Q0M569 Cluster: ABC-2; n=1; Caulobacter sp. K31|Rep: AB...    34   3.3  
UniRef50_Q0LZC4 Cluster: Major facilitator superfamily MFS_1; n=...    33   4.4  
UniRef50_A7RUT4 Cluster: Predicted protein; n=1; Nematostella ve...    33   4.4  
UniRef50_Q8N817 Cluster: CDNA FLJ40133 fis, clone TESTI2012231; ...    33   4.4  
UniRef50_UPI0000510284 Cluster: COG1272: Predicted membrane prot...    33   5.8  
UniRef50_Q29LC7 Cluster: GA13530-PA; n=1; Drosophila pseudoobscu...    33   7.6  

>UniRef50_Q9Y5V3 Cluster: Melanoma-associated antigen D1; n=25;
           Eutheria|Rep: Melanoma-associated antigen D1 - Homo
           sapiens (Human)
          Length = 778

 Score = 35.9 bits (79), Expect = 0.82
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
 Frame = -2

Query: 256 VLWTMPVVLQAIL-WALWTLSVS--MRTVRPLRPMSFIWFVPVLWANAALWPEPSVWAVY 86
           VLW  P+  Q    W   T   +   R   P R     W  PV W N  +WP P +W   
Sbjct: 294 VLWQTPLAWQNPSGWQNQTARQTPPARQSPPARQTPPAWQNPVAWQNPVIWPNPVIWQNP 353

Query: 85  PLW 77
            +W
Sbjct: 354 VIW 356



 Score = 35.9 bits (79), Expect = 0.82
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 154 IWFVPVLWANAALWPEPSVWAVYPLW 77
           IW  PV+W N  +WP P VW    +W
Sbjct: 343 IWPNPVIWQNPVIWPNPIVWPGPVVW 368



 Score = 34.7 bits (76), Expect = 1.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 166 PMSFIWFVPVLWANAALWPEPSVW 95
           P   IW  PV+W N  +WP P VW
Sbjct: 345 PNPVIWQNPVIWPNPIVWPGPVVW 368



 Score = 34.3 bits (75), Expect = 2.5
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = -2

Query: 271 AEMFPVLWTMPVVLQAILWALWTLSVSMRTVRPLRPMSFIWFVPVLWANAALWPEPSVWA 92
           A   P  W  PV  Q  +  +W   V  +    + P   +W  PV+W N   W  P  W 
Sbjct: 325 ARQTPPAWQNPVAWQNPV--IWPNPVIWQNP-VIWPNPIVWPGPVVWPNPLAWQNPPGWQ 381

Query: 91  VYPLW 77
             P W
Sbjct: 382 TPPGW 386


>UniRef50_A2X8G6 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 391

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +3

Query: 126 LAHKTGTNQMKDMGRRGRTVRIETDRVHKAHSMACKTTGMVHSTGNISACKARMVQNTVR 305
           L  K      +  GR+   +R++T ++H A S+A   T +    GN  + ++    NT+ 
Sbjct: 134 LKSKLANMVQRGCGRKREDIRLQTAQMHAALSVARLATAVARMVGNCQS-ESTNANNTIM 192

Query: 306 TVHMGRYKDRKAHM 347
           T  +G+ + RK H+
Sbjct: 193 TA-IGKDEHRKMHV 205


>UniRef50_UPI00003829DC Cluster: hypothetical protein Magn03001889;
           n=1; Magnetospirillum magnetotacticum MS-1|Rep:
           hypothetical protein Magn03001889 - Magnetospirillum
           magnetotacticum MS-1
          Length = 316

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 218 VGLVDPVRLDADRAAPAAHVLHLVRASLVGQCRPVARALRMGSVPPVE-RLAXRGGIWCM 42
           V L+   R+  DRAA  A  +HL+    VG    +  AL    +PPVE R A   G+W  
Sbjct: 199 VVLLPSARIAVDRAALLADPVHLLLPVGVGLAVGLLTALAARRLPPVEGRAALLLGVWLA 258

Query: 41  C 39
           C
Sbjct: 259 C 259


>UniRef50_Q44S92 Cluster: Putative uncharacterized protein; n=4;
           Chlorobium/Pelodictyon group|Rep: Putative
           uncharacterized protein - Chlorobium limicola DSM 245
          Length = 234

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 361 AQLWPMWALRSL*RPMWTVRTVFWTMRALHAEMFPVLWTMPVVLQAILWALW 206
           A LW  W      +P  T  T+  T  A + EM P+   MPV+L+   W LW
Sbjct: 135 AGLWDTWEPTGREKPAVTSCTIITT--AANREMRPIHERMPVILEPETWRLW 184


>UniRef50_Q566A4 Cluster: Putative uncharacterized protein; n=1;
           uncultured bacterium|Rep: Putative uncharacterized
           protein - uncultured bacterium
          Length = 297

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 184 TVRPLRPMSFIWFVPVLWANAALWPEPSVWAVYPLWS 74
           T R LR    +W    LWA  ALW   ++WA   LW+
Sbjct: 150 TRRALRAGVALWAGVALWAGVALWAGVALWAGVALWT 186


>UniRef50_Q0M569 Cluster: ABC-2; n=1; Caulobacter sp. K31|Rep: ABC-2
           - Caulobacter sp. K31
          Length = 407

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = -2

Query: 199 SVSMRTVRPLRPMSFIWFVPVLWA----NAALWPEPSVWAVYPLWSVLLXEVEYGVCALV 32
           S++ R + P       WF P  WA     A LW +  + AVY  WSVL      G+ A+ 
Sbjct: 340 SMAPRFLMPPWLQQIGWFTPHAWAIEAYQAILWRDAGIGAVYKAWSVLTATGLVGL-AVA 398

Query: 31  NVSKYTL 11
           +VS   L
Sbjct: 399 HVSSRRL 405


>UniRef50_Q0LZC4 Cluster: Major facilitator superfamily MFS_1; n=1;
           Caulobacter sp. K31|Rep: Major facilitator superfamily
           MFS_1 - Caulobacter sp. K31
          Length = 405

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -2

Query: 253 LWTMPVVLQAILWALWTLSVSMRTVRPLRPMSFIWFVPVLWANA 122
           +W  PVV+ A+LW+L   + + R    + P++ +W  P+ W+ A
Sbjct: 172 MWAAPVVVAALLWSLQLGAKTARGGDVVLPVTGLWRDPLAWSVA 215


>UniRef50_A7RUT4 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 851

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
 Frame = -2

Query: 355 LWPMWALRSL*RPMWTVRT---VFWTMRALHAEMFPVLWTMPVVLQAILWALWTLSVSMR 185
           LWP+ A   L  P+W +     + W + A H   +P++         + W LW L  S  
Sbjct: 492 LWPLMASHGLSWPLWPLMASHGLSWPLMASHGLSWPLM-----ASHGLSWPLWPLMASHG 546

Query: 184 TVRPLRPMSFIWFVPVLWANAALWPEPSVWAVYPLW 77
              PL  M+F     + W    LWP    W     W
Sbjct: 547 LSWPL--MAFHGLSGLSW---PLWPCSLSWQSLFSW 577


>UniRef50_Q8N817 Cluster: CDNA FLJ40133 fis, clone TESTI2012231;
           n=2; Homo sapiens|Rep: CDNA FLJ40133 fis, clone
           TESTI2012231 - Homo sapiens (Human)
          Length = 225

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 22/83 (26%), Positives = 31/83 (37%)
 Frame = +3

Query: 9   HNVYLETFTNAHTPYSTSXSKTLHRGYTAHTEGSGHRAALAHKTGTNQMKDMGRRGRTVR 188
           HN +  T  N HT +S + +   H  +T HT       A  H T T           T  
Sbjct: 22  HNPHSPTIHNTHTHHSHTHTIWTHHTHTTHTTHINSYKAFTHTTHTPL---TSTHLHTPL 78

Query: 189 IETDRVHKAHSMACKTTGMVHST 257
             T R H  H    + T ++H +
Sbjct: 79  THTPRTHITHHSQTQHTLLIHQS 101


>UniRef50_UPI0000510284 Cluster: COG1272: Predicted membrane
           protein, hemolysin III homolog; n=1; Brevibacterium
           linens BL2|Rep: COG1272: Predicted membrane protein,
           hemolysin III homolog - Brevibacterium linens BL2
          Length = 261

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = -2

Query: 238 VVLQAILWALWTLSVSMRTVRPLRPMSFIW-FVPVL--WANAALWPEPSVWAVYPLWSVL 68
           ++L ++LW    L V+ RT+    P    W FVP+   +  A +   P +WA  P   +L
Sbjct: 149 ILLLSVLWGAALLGVAFRTIFTTAPR---WLFVPIYVGFGVAGVGYIPQIWASNPAVGIL 205

Query: 67  LXEVEYGVCALVNVSKYTL*K 5
           +  V  GVC +V    Y + K
Sbjct: 206 V--VAGGVCYVVGAVIYGIKK 224


>UniRef50_Q29LC7 Cluster: GA13530-PA; n=1; Drosophila
           pseudoobscura|Rep: GA13530-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 509

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 172 LRPMSFIWFVPVLWANAALWPEPSVWAVYPLWSVL 68
           LRP+  +W    LWA   LW   ++W ++PLW++L
Sbjct: 332 LRPLRTLW---TLWALRTLW---TLWRLWPLWALL 360


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,591,755
Number of Sequences: 1657284
Number of extensions: 7789548
Number of successful extensions: 26049
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25923
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)