Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c04
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    31   0.14 
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    27   1.7  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    27   2.3  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   5.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   5.2  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   6.9  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     25   9.1  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   9.1  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 48  PYSTSXSKTLHRGYTAHTEGSGHRAALAHKTGTNQMKDMGRRGRTVRIETDRVHKAHS 221
           PY TS   T+    T+HTE S  +A    +T T +++ +              HK+HS
Sbjct: 732 PYKTSLP-TIVEATTSHTESSNSKAPAIEETTTTKVEVVAAHDAVSISSNSSTHKSHS 788


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 37  MHIHHIPPRLARRSTGGTLPIR 102
           +H  H+PPRL+  ++ GT+P R
Sbjct: 145 VHRKHLPPRLSLVASPGTIPTR 166


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 237 TGMVHSTGNISACKARMVQNTVRTVHMGR-YKDRKAHMGHSWAR 365
           T  +H  G+   CK  +V+N    +   R  + R AH+G+   R
Sbjct: 91  TRSLHDVGDFEQCKRHLVENGKLFIQRARACRQRIAHLGYPLIR 134


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = -2

Query: 223 ILWALWTLSVSMRTVRPLRPMSFIWFVPVLWANAALWPEPSVWAV 89
           +L   WT    M T  P  P+       V W+     P  S W V
Sbjct: 119 VLHQKWTCVAQMSTHLPSDPLELCRIHSVAWSPLVSLPSSSPWGV 163


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 133 WANAALWPEPSVWAVYPLWSVLLXEVEYGV 44
           W +   +P PS W   P ++++L +   GV
Sbjct: 50  WNSHEYFPSPSNWRALPFYTIILDKWTNGV 79


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = -1

Query: 305 ADRVLDHARLACRNVPRAVDHARRFASHTVGLVDPVRLDADRAAPAAHVLHLVRASLVGQ 126
           A +V+D A      +PR V  +       VG+ DP R ++  A    H   +    L G 
Sbjct: 564 ATKVIDKAD-NWETLPRDVAESSLEFVSLVGIYDPPRTESKGAVELCHRAGIRVHMLTGD 622

Query: 125 CRPVARAL--RMGSVPP 81
               A+A+   +G +PP
Sbjct: 623 HPETAKAIAREVGIIPP 639


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 123 ALAHKTGTNQMKDMGRRGRTVRIETDRVHKA 215
           A+  K G+N + D+G+  R V I  +  HK+
Sbjct: 22  AILVKDGSNTIDDIGKTDRLVSIYPNEKHKS 52


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 34  LMHIHHIPPRLARRSTGGTLPIRRARATGRHW 129
           L HI  +P +    +  G LP+RR R + + W
Sbjct: 441 LSHILDLPAQPNNGTYEGALPLRRNRNSTKEW 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,728
Number of Sequences: 5004
Number of extensions: 30124
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)