Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10c03
(492 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 217 3e-57
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 217 3e-57
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 156 9e-39
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 155 2e-38
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 155 2e-38
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 98 3e-21
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 83 1e-16
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 77 9e-15
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 64 7e-11
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 64 7e-11
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 58 3e-09
AF040643-4|AAB94965.1| 110|Caenorhabditis elegans Hypothetical ... 47 9e-06
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 45 3e-05
U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 44 5e-05
AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-lik... 43 1e-04
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 41 4e-04
U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical pr... 40 0.001
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 40 0.001
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 40 0.001
U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical p... 36 0.016
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 36 0.021
Z81568-9|CAB04599.2| 386|Caenorhabditis elegans Hypothetical pr... 35 0.037
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 33 0.11
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 33 0.11
U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF040645-10|AAB94971.2| 110|Caenorhabditis elegans Hypothetical... 29 1.8
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z99281-7|CAC42379.1| 77|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 28 4.2
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme... 27 7.4
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 27 9.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 9.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 9.8
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 217 bits (531), Expect = 3e-57
Identities = 104/112 (92%), Positives = 106/112 (94%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 247 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRK 92
IQKESTLHLVLRLRGG IEPSLR LA KYNC+K ICRKCYARL PRA+NCRK
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRK 112
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 217 bits (531), Expect = 3e-57
Identities = 104/112 (92%), Positives = 106/112 (94%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 247 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRK 92
IQKESTLHLVLRLRGG IEPSLR LA KYNC+K ICRKCYARL PRA+NCRK
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRK 112
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein 1,
isoform a protein.
Length = 838
Score = 156 bits (378), Expect = 9e-39
Identities = 79/92 (85%), Positives = 82/92 (89%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 747 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 806
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGTI 194
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG I
Sbjct: 807 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGDI 838
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 122
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 198
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 274
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 350
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 443 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 502
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 503 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 519 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 578
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 579 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 595 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 654
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 655 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 671 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 730
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 731 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760
Score = 153 bits (372), Expect = 5e-38
Identities = 75/76 (98%), Positives = 75/76 (98%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 247 IQKESTLHLVLRLRGG 200
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 1e-37
Identities = 77/90 (85%), Positives = 80/90 (88%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTL GKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 367 KESTLHLVLRLRGGMQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 426
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 427 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 122
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 198
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 274
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 350
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 153 bits (372), Expect = 5e-38
Identities = 75/76 (98%), Positives = 75/76 (98%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 247 IQKESTLHLVLRLRGG 200
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 1e-37
Identities = 77/90 (85%), Positives = 80/90 (88%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTL GKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 367 KESTLHLVLRLRGGMQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 426
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 427 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 96.3 bits (229), Expect = 1e-20
Identities = 49/61 (80%), Positives = 52/61 (85%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 443 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 502
Query: 289 G 287
G
Sbjct: 503 G 503
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 122
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 198
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 274
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 350
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 367 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 426
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 427 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 443 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 502
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 503 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 519 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 578
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 579 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 595 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 654
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 655 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684
Score = 155 bits (375), Expect = 2e-38
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 671 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 730
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 200
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 731 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760
Score = 155 bits (375), Expect = 2e-38
Identities = 78/92 (84%), Positives = 82/92 (89%)
Frame = -3
Query: 469 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFA 290
K+S + V+ MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFA
Sbjct: 747 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 806
Query: 289 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGTI 194
GKQLEDGRTLSDYNIQK+STLHLVLRLRGG I
Sbjct: 807 GKQLEDGRTLSDYNIQKQSTLHLVLRLRGGDI 838
Score = 153 bits (372), Expect = 5e-38
Identities = 75/76 (98%), Positives = 75/76 (98%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 247 IQKESTLHLVLRLRGG 200
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 98.3 bits (234), Expect = 3e-21
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYN 248
M I VKTLTGK I L++E +D +E +K K+++KEGIPP Q RLIFAGKQ+ D +T +DY
Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYK 60
Query: 247 IQKESTLHLVLRLRGG 200
+ S LHLVL LRGG
Sbjct: 61 VLGGSVLHLVLALRGG 76
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 83.0 bits (196), Expect = 1e-16
Identities = 38/74 (51%), Positives = 52/74 (70%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYN 248
+ + VKTL GKTI + ++ +DT+E +K K+Q+K G+PPDQ RLIF QLE+ R L YN
Sbjct: 161 LTVSVKTLFGKTIPISIKNTDTVETLKFKVQNKHGVPPDQQRLIFGRAQLENDRALFAYN 220
Query: 247 IQKESTLHLVLRLR 206
I+ E +HLV R R
Sbjct: 221 IRDEDIIHLVSRHR 234
Score = 40.3 bits (90), Expect = 7e-04
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = -3
Query: 406 LTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNIQKESTL 227
+TG IT VEASD I+++ K+ + + P ++ +D RT+SDYNI+ STL
Sbjct: 98 VTGDPIT--VEASDAIKDLNFKVAEAQRKPHQPSNIVLC----KDQRTISDYNIKNGSTL 151
Query: 226 HL 221
L
Sbjct: 152 RL 153
Score = 37.5 bits (83), Expect = 0.005
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -3
Query: 436 SNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGI 320
S TM + VKT TGKTIT+E +NVK +++DK+G+
Sbjct: 56 SKTMLLSVKTSTGKTITVEAP-----KNVKTEVRDKQGV 89
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 76.6 bits (180), Expect = 9e-15
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 317
MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 63.7 bits (148), Expect = 7e-11
Identities = 34/74 (45%), Positives = 51/74 (68%)
Frame = -3
Query: 421 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNIQ 242
+FVKTL +T+ LEV A++ + ++K KI+ EGIP ++ RL +AG+QLED SD I
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGID 56
Query: 241 KESTLHLVLRLRGG 200
E+T+++ L L GG
Sbjct: 57 SEATIYVNLELLGG 70
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 63.7 bits (148), Expect = 7e-11
Identities = 34/74 (45%), Positives = 51/74 (68%)
Frame = -3
Query: 421 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNIQ 242
+FVKTL +T+ LEV A++ + ++K KI+ EGIP ++ RL +AG+QLED SD I
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGID 56
Query: 241 KESTLHLVLRLRGG 200
E+T+++ L L GG
Sbjct: 57 SEATIYVNLELLGG 70
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 58.0 bits (134), Expect = 3e-09
Identities = 29/71 (40%), Positives = 43/71 (60%)
Frame = -3
Query: 424 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNI 245
QIFVK L G + ++ DT+ ++K I+ + IP L F+GK+LED ++ DYNI
Sbjct: 155 QIFVKVL-GVSYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGDYNI 213
Query: 244 QKESTLHLVLR 212
QK ST+ + R
Sbjct: 214 QKSSTITMYFR 224
>AF040643-4|AAB94965.1| 110|Caenorhabditis elegans Hypothetical
protein F14D2.11 protein.
Length = 110
Score = 46.8 bits (106), Expect = 9e-06
Identities = 29/72 (40%), Positives = 38/72 (52%)
Frame = -3
Query: 424 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNI 245
Q FV+ L GKT TL V ASDT+E K ++ R+ + GK L D T +YNI
Sbjct: 44 QYFVR-LNGKTRTLNVNASDTVEQGKMQLCHN----ARSTRMSYGGKPLSDQITFGEYNI 98
Query: 244 QKESTLHLVLRL 209
ST+ L R+
Sbjct: 99 SNNSTMDLHFRI 110
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLE---DGRTLS 257
++I+V+ G+T TL+ ASDT+ +VKAKI +K I P+ +L+ L+ D TL
Sbjct: 103 IRIYVEN-AGRTCTLDTSASDTMASVKAKIWEKLRILPNTQKLLLENWDLDLFSDHSTLF 161
Query: 256 DYNIQKESTLHL 221
D + + STL L
Sbjct: 162 DNSFENGSTLRL 173
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGI 320
M + +KT TGK IT+E S VK +++DK+G+
Sbjct: 1 MLLSIKTSTGKNITVEAPKS-----VKTEVRDKQGV 31
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 445 VYFSNTMQIFVKTLTGKTITLEV 377
V + +FVKT TGKTIT+ +
Sbjct: 175 VSIEKEIDVFVKTYTGKTITISI 197
>U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical
protein C16C8.13 protein.
Length = 244
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/61 (40%), Positives = 31/61 (50%)
Frame = -3
Query: 403 TGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNIQKESTLH 224
+G L V SDTI VK I + R++ K LED TL+ YNIQ+ STL
Sbjct: 181 SGNYRNLWVRGSDTIRQVKLTINSLANVDISSFRMVLRDKVLEDDHTLAYYNIQEGSTLG 240
Query: 223 L 221
L
Sbjct: 241 L 241
>AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform b protein.
Length = 47
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/46 (43%), Positives = 33/46 (71%)
Frame = -3
Query: 421 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGK 284
+FVKTL +T+ LEV A++ + ++K KI+ EGIP ++ RL +A +
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAAR 46
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = -3
Query: 385 LEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 206
L V SDTI ++K +I + R++ GK LED +L+ YNIQ+ + + L L+
Sbjct: 210 LRVCGSDTIRHIKLRINSLAKVDISSFRMVLRGKLLEDHHSLAYYNIQEGALIWLYSHLK 269
>U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical
protein C16C8.14 protein.
Length = 233
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = -3
Query: 385 LEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNIQKESTL 227
L V SDTI +K +I GI R K LED TL+ YNI++ ST+
Sbjct: 176 LRVCGSDTIRQIKPRINSLAGIDTISFRTFCDDKFLEDDHTLAHYNIREGSTI 228
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/69 (23%), Positives = 39/69 (56%)
Frame = -3
Query: 406 LTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNIQKESTL 227
+ G + ++ + + +K +IQD+ G+P + +L+ G ++D + + YN+ + +
Sbjct: 584 MDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAI 643
Query: 226 HLVLRLRGG 200
+L ++ RGG
Sbjct: 644 YLQVKERGG 652
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/69 (23%), Positives = 39/69 (56%)
Frame = -3
Query: 406 LTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNIQKESTL 227
+ G + ++ + + +K +IQD+ G+P + +L+ G ++D + + YN+ + +
Sbjct: 584 MDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAI 643
Query: 226 HLVLRLRGG 200
+L ++ RGG
Sbjct: 644 YLQVKERGG 652
>U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical
protein C16C8.11 protein.
Length = 214
Score = 35.9 bits (79), Expect = 0.016
Identities = 18/66 (27%), Positives = 39/66 (59%)
Frame = -3
Query: 409 TLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNIQKEST 230
++ G+ ++ +++E +K KI+ + GIP + L GK L D + L+DY + +++
Sbjct: 149 SMPGRLFSIGANKMESVEQLKMKIECQTGIPRTKFWLRLHGKPLYDDKKLADY--KWDTS 206
Query: 229 LHLVLR 212
+ L++R
Sbjct: 207 VELLVR 212
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 35.5 bits (78), Expect = 0.021
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG--IPPDQXRLIFAGKQLEDGRTLSD 254
+ + +TLT LE+ TI VKA + ++G P+ +LI+ GK L+D + +
Sbjct: 52 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKILDDSVKVGE 111
Query: 253 YNIQKESTLHLVLRLRGGT-IEPS 185
+ ++L R T + PS
Sbjct: 112 VGFDSSKFVVVMLSKRKVTEVAPS 135
>Z81568-9|CAB04599.2| 386|Caenorhabditis elegans Hypothetical
protein K08E3.7 protein.
Length = 386
Score = 34.7 bits (76), Expect = 0.037
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = -3
Query: 412 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDYNIQKES 233
KT + +TL + + IE++ ++ IP D+ ++F GK+L + D ++ +
Sbjct: 13 KTGQRRNLTLNINITGNIEDLTKDVEKLTEIPSDELEVVFCGKKLSKSTIMRDLSLTPAT 72
Query: 232 TLHLV 218
+ L+
Sbjct: 73 QIMLL 77
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
protein ZK688.5b protein.
Length = 1595
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = -3
Query: 430 TMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDY 251
T+++ +KTL + T+ + DTI+++ + + I R+I G+ L +T+
Sbjct: 20 TIRVTLKTLDDREATVTIGLQDTIQSLIDLGRREMNIQSGFQRVIAGGRVLNSTQTVQAA 79
Query: 250 NIQKESTLHLVLR 212
I T+HLV R
Sbjct: 80 GISDGQTVHLVDR 92
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
protein ZK688.5a protein.
Length = 1620
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = -3
Query: 430 TMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLSDY 251
T+++ +KTL + T+ + DTI+++ + + I R+I G+ L +T+
Sbjct: 20 TIRVTLKTLDDREATVTIGLQDTIQSLIDLGRREMNIQSGFQRVIAGGRVLNSTQTVQAA 79
Query: 250 NIQKESTLHLVLR 212
I T+HLV R
Sbjct: 80 GISDGQTVHLVDR 92
>U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical
protein C16C8.5 protein.
Length = 180
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 385 LEVEASDTIENVKAKIQDK-EGIPPDQXRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 209
+EV S I V+ K+ + + L + G++L+D R++ YNI + ++L +
Sbjct: 100 VEVRNSYLIRYVRVKVANLLNNDLVESFNLYYGGQKLQDNRSIGSYNIDQSREIYLKKKK 159
Query: 208 RGGTI 194
+ T+
Sbjct: 160 KLSTL 164
>AF040645-10|AAB94971.2| 110|Caenorhabditis elegans Hypothetical
protein F52C6.2 protein.
Length = 110
Score = 29.1 bits (62), Expect = 1.8
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -3
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQ-LEDGRTLSDY 251
M + +KT TGKTIT+E S VK +++ K+G+ AG Q +E T+ D
Sbjct: 1 MLLSIKTSTGKTITVEAPKS-----VKTEVRYKQGVVFAVSYDKDAGNQIIEMEDTVQDV 55
Query: 250 NIQK 239
IQ+
Sbjct: 56 KIQE 59
>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical protein
F48E3.3 protein.
Length = 1493
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/54 (20%), Positives = 29/54 (53%)
Frame = -3
Query: 433 NTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRLIFAGKQLED 272
+ +Q+ + + TGK++ + VE + +E D+EG+ L+ + ++ ++
Sbjct: 1147 DVLQVVIDSFTGKSVRVRVEKREGMEERNLLSDDEEGVWSSLSNLVSSKEKTQE 1200
>Z99281-7|CAC42379.1| 77|Caenorhabditis elegans Hypothetical
protein Y57G11C.9c protein.
Length = 77
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 410 NPYGEDHYIGGGSFRHYRKCQS*NPRQGRYSSRP 309
N YG +++ GGG FRH + N Y++ P
Sbjct: 5 NNYGYNNHRGGGGFRHNNYNNNNNNHHHHYNNLP 38
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 410 NPYGEDHYIGGGSFRHYRKCQS*NPRQGRYSSRP 309
N YG +++ GGG FRH + N Y++ P
Sbjct: 5 NNYGYNNHRGGGGFRHNNYNNNNNNHHHHYNNLP 38
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 410 NPYGEDHYIGGGSFRHYRKCQS*NPRQGRYSSRP 309
N YG +++ GGG FRH + N Y++ P
Sbjct: 5 NNYGYNNHRGGGGFRHNNYNNNNNNHHHHYNNLP 38
>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
protein 1 protein.
Length = 1425
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 286 KQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMK 164
K ++D R L DY+ K ++L L +I+P LR L +K
Sbjct: 1173 KMIDDIRGLLDYDTAKIGQINLALYHFSDSIQPVLRRLDIK 1213
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -3
Query: 328 EGIPPDQXRLIFA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRI 176
EG P R + + G QL DG L +I+K + RGG E L I
Sbjct: 1463 EGYPAPDVRWVDSHGNQLSDGPLLRIIDIRKTLNAKCLAENRGGLKETDLTI 1514
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -3
Query: 328 EGIPPDQXRLIFA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRI 176
EG P R + + G QL DG L +I+K + RGG E L I
Sbjct: 1526 EGYPAPDVRWVDSHGNQLSDGPLLRIIDIRKTLNAKCLAENRGGLKETDLTI 1577
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -3
Query: 328 EGIPPDQXRLIFA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRI 176
EG P R + + G QL DG L +I+K + RGG E L I
Sbjct: 1526 EGYPAPDVRWVDSHGNQLSDGPLLRIIDIRKTLNAKCLAENRGGLKETDLTI 1577
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,364,315
Number of Sequences: 27780
Number of extensions: 234963
Number of successful extensions: 633
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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