Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c02
         (809 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.9  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   6.6  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   6.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.8  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   8.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 424 FFRILNFIRQFCCRFLA 474
           F  + NF R+FC R+ A
Sbjct: 538 FLGLCNFYRKFCARYSA 554


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 222 HRYRNAHFEDRVSNRLDDNDHLQMVNNTEKSVRY 121
           H+Y     E+  S   DD+D   M N+  ++ R+
Sbjct: 274 HKYEKIDKEEHESMDDDDDDDDDMSNSENQNPRF 307


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 198 EDRVSNRLDDNDHLQMVNNTEKSVRYRTRRRS 103
           ++ VS ++DDN  +  V       +YR   R+
Sbjct: 180 KEEVSKKIDDNQKVGYVVEGRNYRKYRVEERT 211


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -3

Query: 714 NFHVDVFEIFINVLMLFNWVH 652
           N H+  +++  +V++L +W+H
Sbjct: 270 NSHLYDYDLTTHVMLLSDWMH 290


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -3

Query: 714 NFHVDVFEIFINVLMLFNWVH 652
           N H+  +++  +V++L +W+H
Sbjct: 270 NSHLYDYDLTTHVMLLSDWMH 290


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 294 EQILHEIDEIKTKLNGIRTVKHNK 223
           +QIL E D+I   L+ ++++ + K
Sbjct: 217 DQILREFDQIVVILSKVKSILNKK 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,595
Number of Sequences: 336
Number of extensions: 3708
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)