Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c02
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          26   0.47 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      26   0.47 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          26   0.47 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.83 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   1.4  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    24   1.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   7.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 204 HFEDRVSNRLDDNDHLQMVNNTEKSVRYRTRRRSYLLH 91
           HFE  ++N +    H +  N   K+ +YR   + +  H
Sbjct: 464 HFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTYH 501


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 204 HFEDRVSNRLDDNDHLQMVNNTEKSVRYRTRRRSYLLH 91
           HFE  ++N +    H +  N   K+ +YR   + +  H
Sbjct: 464 HFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTYH 501


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 204 HFEDRVSNRLDDNDHLQMVNNTEKSVRYRTRRRSYLLH 91
           HFE  ++N +    H +  N   K+ +YR   + +  H
Sbjct: 90  HFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTYH 127


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 24/88 (27%), Positives = 39/88 (44%)
 Frame = -3

Query: 474 CQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQN 295
           CQK  TKL N +  ++  +  +  N  +EK     ++ L  +     H    TE   K+ 
Sbjct: 10  CQKKPTKLRNLIYKTEAFDSLHAGN--AEKTLCSGQVCLGSVMQLPIHG---TEPRSKE- 63

Query: 294 EQILHEIDEIKTKLNGIRTVKHNKHRYR 211
           E +LH  D ++   + IR +    HR R
Sbjct: 64  EILLHAKDFLEQYFSSIRRLNSEAHRIR 91


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 576 CCFCESKYHTKCMNETAKSICEGGDRG 496
           C FC  +Y TK    T KS+   G  G
Sbjct: 38  CEFCNRRYRTKNSLTTHKSLQHRGSSG 64


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 141 TEKSVRYRTRRRSYLLHNMLRLLNSRNKVRRR 46
           T+K +R+++ R S L  N  +     N+VRRR
Sbjct: 16  TKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRR 47


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 687 ISQKHLHENLK*LWTVVNYYINLNYNKNCCHVKTY*NIXW 806
           +S K +H N    +     Y N NYN NC   K Y NI +
Sbjct: 85  LSNKTIHNNNNYKYN----YNNNNYNNNC--KKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 687 ISQKHLHENLK*LWTVVNYYINLNYNKNCCHVKTY*NIXW 806
           +S K +H N    +     Y N NYN NC   K Y NI +
Sbjct: 85  LSNKTIHNNNNYKYN----YNNNNYNNNC--KKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 687 ISQKHLHENLK*LWTVVNYYINLNYNKNCCHVKTY*NIXW 806
           +S K +H N    +     Y N NYN NC   K Y NI +
Sbjct: 85  LSNKTIHNNNNYKYN----YNNNNYNNNC--KKLYYNINY 118


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 492 DIPDLLLRRYF*PFHSYTSYGISIRKNNI*YFQRAEVFCDSTH 620
           ++P  ++R +  P H +    ISI KN    F   + F  + H
Sbjct: 529 NVPGAVVRVFLGPKHDHQGRPISISKNQH-LFVELDQFIQNLH 570


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 744 YINLNYNKNCCHVKTY*NIXW 806
           Y N NYN NC   K Y NI +
Sbjct: 100 YNNNNYNNNC--KKLYYNINY 118


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 518 ILLAVSFIHFVWYFDSQKQHLILSACRSVL*QYAQTILWKFDSRECTQLNSIKTLMNIS- 694
           + + V+ I   W F   + H +    R +  +Y  TIL     ++ T+L  +  + N++ 
Sbjct: 309 VSILVTVIIINWNFRGPRTHRMPQLIRKIFLKYLPTILMMRRPKK-TRLRWMMEIPNVTL 367

Query: 695 KTST 706
            TST
Sbjct: 368 PTST 371


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 553 PYEVYE*NG*KYLRRRRSGISMEMRCLPKIC 461
           PY +   NG K L +   G  + ++CL  +C
Sbjct: 362 PYPLNTTNGRKGLLKGGGGYLLGIQCLTVVC 392


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 509 EEIGDINGNALFAKNLQQNCRMKF 438
           EEIG ++   ++  +++  CR  F
Sbjct: 393 EEIGMVDNTTIYKYDVRDGCRTPF 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,580
Number of Sequences: 438
Number of extensions: 4361
Number of successful extensions: 31
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)