Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c01
         (462 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P09310 Cluster: Transcriptional transactivator IE62; n=...    34   1.7  
UniRef50_Q08547 Cluster: Immediate-early protein; n=2; Cercopith...    33   3.0  
UniRef50_Q8N0R5 Cluster: Cycle like factor BmCyc b; n=4; Obtecto...    32   5.3  

>UniRef50_P09310 Cluster: Transcriptional transactivator IE62; n=24;
            Human herpesvirus 3|Rep: Transcriptional transactivator
            IE62 - Varicella-zoster virus (strain Dumas) (HHV-3)
            (Human herpesvirus 3)
          Length = 1310

 Score = 33.9 bits (74), Expect = 1.7
 Identities = 21/50 (42%), Positives = 24/50 (48%)
 Frame = -1

Query: 321  LSKNITRVLVLKSIDCCGTRANS*SFHGLIRGMADFIDEASTSQRGQSRW 172
            LS    R  VL   D C   A      GL  G ADF+DEA+ S R  +RW
Sbjct: 1050 LSPREYRQYVLPGFDGCKDLARQ--SRGLGLGAADFVDEAAHSHRAANRW 1097


>UniRef50_Q08547 Cluster: Immediate-early protein; n=2; Cercopithecine
            herpesvirus 9|Rep: Immediate-early protein -
            Cercopithecine herpesvirus 9 (Simian varicella virus)
          Length = 1277

 Score = 33.1 bits (72), Expect = 3.0
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = -1

Query: 321  LSKNITRVLVLKSIDCCGTRANS*SFHGLIRGMADFIDEASTSQRGQSRW 172
            LS    R  VL   D C   A      GL  G ADF+D+A+ S R  +RW
Sbjct: 1018 LSPRDYRQYVLPGFDGCKDIARQ--AQGLAVGAADFVDDAAYSHRAANRW 1065


>UniRef50_Q8N0R5 Cluster: Cycle like factor BmCyc b; n=4;
           Obtectomera|Rep: Cycle like factor BmCyc b - Bombyx mori
           (Silk moth)
          Length = 700

 Score = 32.3 bits (70), Expect = 5.3
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -1

Query: 225 MADFIDEASTSQRGQS 178
           MADFIDEASTSQRG +
Sbjct: 1   MADFIDEASTSQRGHA 16


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,214,653
Number of Sequences: 1657284
Number of extensions: 6731210
Number of successful extensions: 14300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14299
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24771286585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)