Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c01
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    30   0.20 
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   1.8  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   3.2  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    25   5.6  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    24   9.8  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 125 LRLEALASRQHSHCHFHRLCPRCDVLASSIKSAIP 229
           LR   +  R + HC   R C +CD +   +K A P
Sbjct: 134 LRRSQICKRINDHCKKMRRCSKCDAMQGVVKKAGP 168


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 439 KVTSDNLEIYFILINI*NSVPFNRFVGICICKSKGYCA*IIKKHNSS 299
           K T   LE+Y    ++  ++PF +  GI + ++  +    +K+H+SS
Sbjct: 411 KRTKVRLEMYDDCCHVVTALPFVKEAGIMVRRAANFAYWCLKQHDSS 457


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 251 HEFALVPQQSILFNTSTRVMFFDNLSTISL*FTDTNTDEPVEWYG 385
           H  ++V QQS + +  T  +  DNL+      T TN DE V W G
Sbjct: 684 HYISVVTQQSPIESRFTDRLV-DNLNAEVSLGTVTNIDEAVSWLG 727


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 230 RIRPWKLHEFALVPQQSILFN 292
           R+RPW L + A   +Q+ILF+
Sbjct: 413 RVRPWYLDQQARYMRQTILFS 433


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 158 NAALKQELQVSIV*FNTCPTIEGTLQYSKS 69
           +AA+KQ    +IV    CP+IE   QY++S
Sbjct: 611 DAAIKQVFSKTIV----CPSIETASQYARS 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,529
Number of Sequences: 5004
Number of extensions: 31500
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)