Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10c01
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0681 + 18628107-18629346,18630476-18630486,18630836-186309...    28   4.2  
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493...    27   5.6  
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841...    27   9.7  

>04_03_0681 +
           18628107-18629346,18630476-18630486,18630836-18630943,
           18631158-18631250
          Length = 483

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 98  W*DRY*TIQLRLEALASRQHSHCHFHRLCPRCDVLASSIKSAI 226
           W   + T   RLE ++     +CH HR+  +CD+    +  A+
Sbjct: 371 WIFAFNTENNRLEEISPFSQENCHLHRIYLQCDLSKHLMNKAL 413


>06_01_0675 +
           4937309-4937354,4937606-4937718,4937810-4937905,
           4938003-4938059,4938145-4938300,4938402-4938486,
           4938727-4938817,4938896-4939060,4939150-4939345,
           4939593-4939731,4940187-4941874,4942575-4942765,
           4942850-4942994
          Length = 1055

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 206 SSIKSAIPRIRPWKLHEFALVPQQSILF 289
           + ++SA  R  PW   +FAL   QS LF
Sbjct: 385 NEVESAFKRAMPWLADDFALKDVQSALF 412


>09_04_0600 +
           18883094-18883393,18883606-18883755,18883851-18884142,
           18884697-18884858,18884958-18885021,18887573-18888080
          Length = 491

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 188 RCDVLASSIKSAIPRIRPWKL 250
           RC VL  S+  A P  RPW +
Sbjct: 394 RCSVLFDSVAHADPAARPWSI 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,954,229
Number of Sequences: 37544
Number of extensions: 173438
Number of successful extensions: 362
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)