Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10b24
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 402 e-113
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 399 e-112
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 177 1e-45
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 102 7e-23
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.5
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 3.4
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 7.8
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 402 bits (990), Expect = e-113
Identities = 181/223 (81%), Positives = 202/223 (90%)
Frame = -1
Query: 789 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 610
LDIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++
Sbjct: 221 LDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIV 280
Query: 609 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIGTIK 430
SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK
Sbjct: 281 SAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIK 340
Query: 429 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLNHKFD 250
++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAWSRL+HKFD
Sbjct: 341 SRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFD 400
Query: 249 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 121
LMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 401 LMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -3
Query: 850 HSDAAFMVDNEAIYDICRR 794
+SD FMVDNEA YDICRR
Sbjct: 201 NSDCTFMVDNEACYDICRR 219
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 399 bits (982), Expect = e-112
Identities = 180/223 (80%), Positives = 201/223 (90%)
Frame = -1
Query: 789 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 610
LDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++
Sbjct: 217 LDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIV 276
Query: 609 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIGTIK 430
SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK
Sbjct: 277 SAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIK 336
Query: 429 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLNHKFD 250
KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAWSRL+HKFD
Sbjct: 337 AKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFD 396
Query: 249 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 121
LMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 397 LMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
Score = 34.3 bits (75), Expect = 0.022
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -3
Query: 847 SDAAFMVDNEAIYDICRR 794
+D FMVDNE+ YDICRR
Sbjct: 198 ADCTFMVDNESCYDICRR 215
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 177 bits (432), Expect = 1e-45
Identities = 86/226 (38%), Positives = 135/226 (59%), Gaps = 3/226 (1%)
Frame = -1
Query: 792 TLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV 613
TL I+ P+Y +LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+
Sbjct: 214 TLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPL 273
Query: 612 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIGTI 433
+ + + +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I ++
Sbjct: 274 AAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSV 333
Query: 432 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLNHKF 253
+TK + FV+W P + PP DL + + + N+T+I E + RL +F
Sbjct: 334 QTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQF 385
Query: 252 DLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 124
M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 386 SAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 102 bits (244), Expect = 7e-23
Identities = 61/224 (27%), Positives = 114/224 (50%), Gaps = 7/224 (3%)
Frame = -1
Query: 789 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 610
L + PT+ N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P
Sbjct: 218 LHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFT 277
Query: 609 S---AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAI 442
+ E + +V ++ P NQMV +P + +++ + +G+ P DV+ ++
Sbjct: 278 NQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSL 337
Query: 441 GTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLN 262
I+ +R F+ W P +V ++ + P + ++ + ML+N T+IA + R
Sbjct: 338 LRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTL 392
Query: 261 HKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 139
++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 393 DQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 567 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 442
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -1
Query: 507 KYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 328
++ + Y + KDVN +G TI +W PTG ++ Y V D
Sbjct: 142 RHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GN 199
Query: 327 VQR 319
VQR
Sbjct: 200 VQR 202
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 274 PRLCYGSSIGQHAHGALHLRQISTRYHSWWLIVYPHLESCRAPVYKLNGAFRFD-GANGG 450
PR Y ++G+ A GA+ Q+ +L+VYP + +L G + G N
Sbjct: 710 PRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNAT 769
Query: 451 IYIL 462
+ I+
Sbjct: 770 VAIM 773
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,527,098
Number of Sequences: 5004
Number of extensions: 76650
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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