Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b22
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    29   0.63 
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   3.3  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   3.3  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    26   7.7  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    26   7.7  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    26   7.7  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -3

Query: 682 VFTQPEIIENDLEDLPDDFYELTIEEVRKLYKDLQQQRLKLENT 551
           +FTQ ++++   E+  DD YE   EE ++LYK+ +    K+E +
Sbjct: 176 LFTQKQMLQLQNENFKDD-YEKIKEENKRLYKERKSFLSKIEKS 218


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -3

Query: 262 FKWLEENPDSLYLKKEIYSNTTTSDAASILASKYRAPSRRK 140
           F  L++NP S+Y  K+  +++  S A+ +L ++ +AP   +
Sbjct: 655 FLKLQDNPSSIYFAKQ--TDSRQSSASKLLYARLQAPEHAR 693


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -3

Query: 343 FTTPLKETLEPKMTLLEARFVPCVHMHFKWLEENPDSLYLKKEIY 209
           F  P KE     + L  A F PC  M    LE+NP  LY    I+
Sbjct: 227 FIEPYKENNTEHLHLKSA-FEPCQMMPGMLLEQNPQFLYDNPSIF 270


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 807 RICQKWTPIGEILLHLYHKNFLERRLKIXRRSKFFWVHKKLLYSHNQKS 661
           R+ +K+   G+I  HLYH  +LE +    +       HK+ L  H Q++
Sbjct: 104 RLLRKYRESGKIDKHLYHTLYLEAKGNTFK-------HKRALIEHIQRA 145


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 807 RICQKWTPIGEILLHLYHKNFLERRLKIXRRSKFFWVHKKLLYSHNQKS 661
           R+ +K+   G+I  HLYH  +LE +    +       HK+ L  H Q++
Sbjct: 104 RLLRKYRESGKIDKHLYHTLYLEAKGNTFK-------HKRALIEHIQRA 145


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 472 AVVRIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKP 353
           A + I+FPD       F   DT+E V N++   L   E+P
Sbjct: 328 ARLSIRFPDGSRAVRRFKKDDTVESVYNYVDYMLFEKEEP 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,183
Number of Sequences: 5004
Number of extensions: 66859
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)