Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10b22
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0298 + 24228569-24228763,24229792-24229900,24230001-242300... 64 1e-10
03_05_0427 + 24142474-24142502,24143679-24143739,24146678-241470... 64 2e-10
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 63 2e-10
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 31 1.2
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 30 2.7
>04_04_0298 +
24228569-24228763,24229792-24229900,24230001-24230069,
24230159-24230262,24230361-24230490,24231270-24231374,
24231479-24231689,24231917-24231927,24232331-24232341,
24233863-24233979,24234376-24234441,24234728-24234790,
24236577-24236652,24238003-24238064,24238573-24238658,
24238978-24239026,24239099-24239279,24239448-24239596,
24239682-24239750,24240920-24240991,24241122-24241269,
24241403-24241498,24242024-24242094,24242223-24242338,
24242453-24242498,24242611-24242781
Length = 860
Score = 64.1 bits (149), Expect = 1e-10
Identities = 34/101 (33%), Positives = 62/101 (61%), Gaps = 10/101 (9%)
Frame = -3
Query: 484 KYKNAVVRIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETL-EPK 308
K K AV+R++FPD IL+ F P++T++ + +FLK+ ++ P+ PF+++T P K+ + +
Sbjct: 156 KIKKAVMRVRFPDGYILEADFHPSETVQSLMDFLKKVISRPDLPFYLYTVPPKKRIKDTS 215
Query: 307 MTLLEARFVPCVHMHFKW-----LEENPDSL----YLKKEI 212
+ FVP +++F + E N DS+ YL++EI
Sbjct: 216 LDFYTIGFVPGANVYFSYDLPEGSELNTDSVKSGPYLREEI 256
>03_05_0427 +
24142474-24142502,24143679-24143739,24146678-24147022,
24147651-24147929,24149063-24149230
Length = 293
Score = 63.7 bits (148), Expect = 2e-10
Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Frame = -3
Query: 643 DLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXXKLNKYKNAVV 464
DLPD FY L+ EE+R + + +R +LE + L+ KYK A++
Sbjct: 161 DLPDYFYSLSNEEIRN---EAKMRRGRLEQSWLLIPKSYKEKQALAAR----QKYKQALI 213
Query: 463 RIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIF---------TTPLKETLEP 311
RI FPD +ILQG+F PT+ I + F L P F + T P + E
Sbjct: 214 RIPFPDGVILQGVFLPTEPISSLYEFAASALKQPSLEFDLICPAGPRTRVTPPFPQPGER 273
Query: 310 KMTLLEARFVPCVHMHFK 257
TLL+ VP + FK
Sbjct: 274 AHTLLDEDLVPSARLTFK 291
>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
Length = 433
Score = 63.3 bits (147), Expect = 2e-10
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Frame = -3
Query: 643 DLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXXKLNKYKNAVV 464
DLPD FY L+ EE+R + + +R +LE + L+ KYK A++
Sbjct: 275 DLPDSFYSLSNEEIRN---EAKMRRERLEQSRLLIPKSYKEKQALAAR----QKYKQALI 327
Query: 463 RIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIF---------TTPLKETLEP 311
RIQFPD +ILQG+F P + I + F+ L P F + P + E
Sbjct: 328 RIQFPDGVILQGVFLPAEPISSLYEFVASSLKQPSLEFDLICPAGPRTRVIPPFPKPGEQ 387
Query: 310 KMTLLEARFVPCVHMHFK 257
TL + VP + FK
Sbjct: 388 ARTLRDEDLVPSARLTFK 405
>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 430 GIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETLEPKMTLL 296
G+ + T +ED N L+ ++ KP + +TP E ++P T +
Sbjct: 1411 GVQSNTQQLEDARNQLQTDASNSVKPSQLISTPSAEAVQPSSTAM 1455
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 385 LKEHLAHPEKPFHIFTTPLKETLEPK 308
L++HLA + P+H F+T ETLE K
Sbjct: 670 LQKHLASKDHPYHKFSTGSWETLETK 695
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,231
Number of Sequences: 37544
Number of extensions: 352574
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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