Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10b22
(846 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018722-1|AAH18722.1| 553|Homo sapiens alveolar soft part sarc... 105 2e-22
AF324219-1|AAK08959.2| 553|Homo sapiens ASPL protein. 105 2e-22
AK057403-1|BAB71472.1| 647|Homo sapiens protein ( Homo sapiens ... 88 4e-17
AK057851-1|BAB71595.1| 501|Homo sapiens protein ( Homo sapiens ... 79 3e-14
BC017113-1|AAH17113.1| 196|Homo sapiens Similar to UBX domain-c... 52 2e-06
BC008288-1|AAH08288.1| 388|Homo sapiens UBXD1 protein protein. 52 2e-06
BC007414-1|AAH07414.2| 293|Homo sapiens UBXD1 protein protein. 52 2e-06
AF272894-1|AAK13258.1| 388|Homo sapiens UBX domain-containing p... 52 2e-06
AF272893-1|AAK13257.1| 441|Homo sapiens UBX domain-containing p... 52 2e-06
BC006152-1|AAH06152.1| 348|Homo sapiens ASPSCR1 protein protein. 41 0.006
M93426-1|AAA60225.1| 2314|Homo sapiens protein tyrosine phosphat... 32 3.0
AC006020-1|AAF03527.1| 1648|Homo sapiens WUGSC:H_DJ1049N15.1 pro... 32 3.0
>BC018722-1|AAH18722.1| 553|Homo sapiens alveolar soft part sarcoma
chromosome region, candidate 1 protein.
Length = 553
Score = 105 bits (252), Expect = 2e-22
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Frame = -3
Query: 643 DLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXXKLNKYKNAVV 464
+LPD+F+ELT+++VR+ L+ +R +LE PL+ L +Y +
Sbjct: 339 ELPDEFFELTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQIKEK-----LERYPKVAL 393
Query: 463 RIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETLEP-KMTLLEAR 287
R+ FPD +LQG F P++T+ D+ +F++ HL +PE F++F TP K L+ TL +A
Sbjct: 394 RVLFPDRYVLQGFFRPSETVGDLRDFVRSHLGNPELSFYLFITPPKTVLDDHTQTLFQAN 453
Query: 286 FVPCVHMHFKWLEENPDSLYLKKEIYSNTTTSDAASILASKY 161
P +H E P +YL+ + + + AA +L ++Y
Sbjct: 454 LFPAALVHLG--AEEPAGVYLEPGLLEHAISPSAADVLVARY 493
>AF324219-1|AAK08959.2| 553|Homo sapiens ASPL protein.
Length = 553
Score = 105 bits (252), Expect = 2e-22
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Frame = -3
Query: 643 DLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXXKLNKYKNAVV 464
+LPD+F+ELT+++VR+ L+ +R +LE PL+ L +Y +
Sbjct: 339 ELPDEFFELTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQIKEK-----LERYPKVAL 393
Query: 463 RIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETLEP-KMTLLEAR 287
R+ FPD +LQG F P++T+ D+ +F++ HL +PE F++F TP K L+ TL +A
Sbjct: 394 RVLFPDRYVLQGFFRPSETVGDLRDFVRSHLGNPELSFYLFITPPKTVLDDHTQTLFQAN 453
Query: 286 FVPCVHMHFKWLEENPDSLYLKKEIYSNTTTSDAASILASKY 161
P +H E P +YL+ + + + AA +L ++Y
Sbjct: 454 LFPAALVHLG--AEEPAGVYLEPGLLEHAISPSAADVLVARY 493
>AK057403-1|BAB71472.1| 647|Homo sapiens protein ( Homo sapiens
cDNA FLJ32841 fis, clone TESTI2003325. ).
Length = 647
Score = 87.8 bits (208), Expect = 4e-17
Identities = 39/110 (35%), Positives = 65/110 (59%)
Frame = -3
Query: 643 DLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXXKLNKYKNAVV 464
+LPD+F+ELT+++VR+ L+ +R +LE PL+ L +Y +
Sbjct: 339 ELPDEFFELTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQIKEK-----LERYPKVAL 393
Query: 463 RIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETLE 314
R+ FPD +LQG F P++T+ D+ +F++ HL +PE F++F TP K L+
Sbjct: 394 RVLFPDRYVLQGFFRPSETVGDLRDFVRSHLGNPELSFYLFITPPKTVLD 443
>AK057851-1|BAB71595.1| 501|Homo sapiens protein ( Homo sapiens
cDNA FLJ25122 fis, clone CBR06126. ).
Length = 501
Score = 78.6 bits (185), Expect = 3e-14
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 26/187 (13%)
Frame = -3
Query: 643 DLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXXKLNKYKNAVV 464
+LPD+F+ELT+++VR+ L+ +R +LE PL+ L +Y +
Sbjct: 262 ELPDEFFELTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQIKEK-----LERYPKVAL 316
Query: 463 RIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHI-------------------- 344
R+ FPD +LQG F P++T+ D+ +F++ HL +PE F++
Sbjct: 317 RVLFPDRYVLQGFFRPSETVGDLRDFVRSHLGNPELSFYLCLSSFGRMDGRGPRCFLTRR 376
Query: 343 -----FTTPLKETLE-PKMTLLEARFVPCVHMHFKWLEENPDSLYLKKEIYSNTTTSDAA 182
TP K L+ TL +A P +H E P +YL+ + + + AA
Sbjct: 377 CLLSSVITPPKTVLDGHTQTLFQANLFPAALVHLG--AEEPAGVYLEPGLLEHAISPSAA 434
Query: 181 SILASKY 161
+L ++Y
Sbjct: 435 DVLVARY 441
>BC017113-1|AAH17113.1| 196|Homo sapiens Similar to UBX
domain-containing 1 protein.
Length = 196
Score = 52.4 bits (120), Expect = 2e-06
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Frame = -3
Query: 673 QPEIIENDLEDLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXX 494
QP + + E LP DF+ LT EE+++ +QRL+ E +
Sbjct: 33 QPSPLASQFE-LPGDFFNLTAEEIKR------EQRLRSEAVERLSVLRTKAMREKEEQRG 85
Query: 493 KLNKYKNAVVRIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETLE 314
L KY ++R++ PD +LQG F + + V F++E L PF + + ++ E
Sbjct: 86 -LRKYNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASGGQKLSE 144
Query: 313 PK-MTLLEARFVPCVHMHFKW 254
+ + L E VP + F W
Sbjct: 145 DENLALNECGLVPSALLTFSW 165
>BC008288-1|AAH08288.1| 388|Homo sapiens UBXD1 protein protein.
Length = 388
Score = 52.4 bits (120), Expect = 2e-06
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Frame = -3
Query: 673 QPEIIENDLEDLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXX 494
QP + + E LP DF+ LT EE+++ +QRL+ E +
Sbjct: 225 QPSPLASQFE-LPGDFFNLTAEEIKR------EQRLRSEAVERLSVLRTKAMREKEEQRG 277
Query: 493 KLNKYKNAVVRIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETLE 314
L KY ++R++ PD +LQG F + + V F++E L PF + + ++ E
Sbjct: 278 -LRKYNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASGGQKLSE 336
Query: 313 PK-MTLLEARFVPCVHMHFKW 254
+ + L E VP + F W
Sbjct: 337 DENLALNECGLVPSALLTFSW 357
>BC007414-1|AAH07414.2| 293|Homo sapiens UBXD1 protein protein.
Length = 293
Score = 52.4 bits (120), Expect = 2e-06
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Frame = -3
Query: 673 QPEIIENDLEDLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXX 494
QP + + E LP DF+ LT EE+++ +QRL+ E +
Sbjct: 130 QPSPLASQFE-LPGDFFNLTAEEIKR------EQRLRSEAVERLSVLRTKAMREKEEQRG 182
Query: 493 KLNKYKNAVVRIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETLE 314
L KY ++R++ PD +LQG F + + V F++E L PF + + ++ E
Sbjct: 183 -LRKYNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASGGQKLSE 241
Query: 313 PK-MTLLEARFVPCVHMHFKW 254
+ + L E VP + F W
Sbjct: 242 DENLALNECGLVPSALLTFSW 262
>AF272894-1|AAK13258.1| 388|Homo sapiens UBX domain-containing
protein 1 protein.
Length = 388
Score = 52.4 bits (120), Expect = 2e-06
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Frame = -3
Query: 673 QPEIIENDLEDLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXX 494
QP + + E LP DF+ LT EE+++ +QRL+ E +
Sbjct: 225 QPSPLASQFE-LPGDFFNLTAEEIKR------EQRLRSEAVERLSVLRTKAMREKEEQRG 277
Query: 493 KLNKYKNAVVRIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETLE 314
L KY ++R++ PD +LQG F + + V F++E L PF + + ++ E
Sbjct: 278 -LRKYNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASGGQKLSE 336
Query: 313 PK-MTLLEARFVPCVHMHFKW 254
+ + L E VP + F W
Sbjct: 337 DENLALNECGLVPSALLTFSW 357
>AF272893-1|AAK13257.1| 441|Homo sapiens UBX domain-containing
protein 1 protein.
Length = 441
Score = 52.4 bits (120), Expect = 2e-06
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Frame = -3
Query: 673 QPEIIENDLEDLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXX 494
QP + + E LP DF+ LT EE+++ +QRL+ E +
Sbjct: 278 QPSPLASQFE-LPGDFFNLTAEEIKR------EQRLRSEAVERLSVLRTKAMREKEEQRG 330
Query: 493 KLNKYKNAVVRIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETLE 314
L KY ++R++ PD +LQG F + + V F++E L PF + + ++ E
Sbjct: 331 -LRKYNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASGGQKLSE 389
Query: 313 PK-MTLLEARFVPCVHMHFKW 254
+ + L E VP + F W
Sbjct: 390 DENLALNECGLVPSALLTFSW 410
>BC006152-1|AAH06152.1| 348|Homo sapiens ASPSCR1 protein protein.
Length = 348
Score = 40.7 bits (91), Expect = 0.006
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = -3
Query: 643 DLPDDFYELTIEEVRKLYKDLQQQRLKLENTPLM 542
+LPD+F+ELT+++VR+ L+ +R +LE PL+
Sbjct: 262 ELPDEFFELTVDDVRRRLAQLKSERKRLEEAPLV 295
>M93426-1|AAA60225.1| 2314|Homo sapiens protein tyrosine phosphatase
zeta-polypeptide protein.
Length = 2314
Score = 31.9 bits (69), Expect = 3.0
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = -3
Query: 484 KYKNAVVRIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETLEPKM 305
KY+ +++ + H ++ +++ D + N L+ + AHP K H+F TP+ EP
Sbjct: 1268 KYEPVLLKSE-SSHQVVPSLYS-NDELFQTAN-LEINQAHPPKGRHVFATPVLSIDEPLN 1324
Query: 304 TLL 296
TL+
Sbjct: 1325 TLI 1327
>AC006020-1|AAF03527.1| 1648|Homo sapiens WUGSC:H_DJ1049N15.1
protein.
Length = 1648
Score = 31.9 bits (69), Expect = 3.0
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = -3
Query: 484 KYKNAVVRIQFPDHMILQGIFAPTDTIEDVTNFLKEHLAHPEKPFHIFTTPLKETLEPKM 305
KY+ +++ + H ++ +++ D + N L+ + AHP K H+F TP+ EP
Sbjct: 601 KYEPVLLKSE-SSHQVVPSLYS-NDELFQTAN-LEINQAHPPKGRHVFATPVLSIDEPLN 657
Query: 304 TLL 296
TL+
Sbjct: 658 TLI 660
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,815,643
Number of Sequences: 237096
Number of extensions: 2079914
Number of successful extensions: 4034
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4023
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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