Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b22
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71178-8|CAA94882.1|  552|Caenorhabditis elegans Hypothetical pr...    33   0.34 
AF099920-2|AAL32226.2|  437|Caenorhabditis elegans Hypothetical ...    31   0.78 
AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm rece...    29   3.1  
U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula (ubiq...    28   7.3  

>Z71178-8|CAA94882.1|  552|Caenorhabditis elegans Hypothetical
           protein B0024.10 protein.
          Length = 552

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
 Frame = -3

Query: 694 QKAIVFTQPEIIENDLEDLP-DDFYELTIEEVRKLYKDLQQQRLKLENTPLMXXXXXXXX 518
           ++A+++ +   ++   E +  ++F+E+ IE+VR + KDL+    K               
Sbjct: 332 RQAVIYKKRARVQTTDEPMETEEFFEVGIEDVRNMQKDLR----KAVRDQTQASFISKEY 387

Query: 517 XXXXXXXXKLNKYKNAVVRIQFPDHMILQGIFAPTDTIEDVTNFLKEHL 371
                   KL  YK+ V+RI   +H ILQ  F   +   ++  FL   L
Sbjct: 388 LAKKNRQLKLEAYKHTVIRISIGEH-ILQVYFNTAEQSSNLDLFLNNVL 435


>AF099920-2|AAL32226.2|  437|Caenorhabditis elegans Hypothetical
           protein H06H21.6 protein.
          Length = 437

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = -3

Query: 640 LPDDFYELTIEEVR--KLYKDLQQQRLKLENTPLMXXXXXXXXXXXXXXXXKLNKYKNAV 467
           L DDFY L+  E++  +  K++Q +R+    T  M                   +YK  +
Sbjct: 288 LADDFYNLSTAELKAEQRNKEMQVERMLTLRTKEMRQKDEQMTNY---------RYKYTL 338

Query: 466 VRIQFPDHMILQGIFAPTDTIEDVTNFLKEHLA 368
           +R++ P ++++QG+F   +    V  F+   L+
Sbjct: 339 IRVRLPGNLLMQGVFGCHEPFSAVRVFVASTLS 371


>AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 85 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 709 IFLGTQKAIVFTQPEIIENDLEDLPDDFYELTIEEV 602
           I + T K   F Q E + N+L D    +Y LT+EEV
Sbjct: 140 ISMVTVKYFAFPQKERLTNELRDDFSQYYNLTMEEV 175


>U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula
           (ubiquitin activating)homolog protein 1 protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 361 EKPFHIFTTPLKETLEPKMTLLEARFVPCVHMHFKWLE 248
           + PF      + ET   +MTL + R  P + +HFK LE
Sbjct: 183 DAPFSKLIEMINETNLDEMTLEQLRHTPYILLHFKALE 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,809,297
Number of Sequences: 27780
Number of extensions: 363342
Number of successful extensions: 908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)