Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b21
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    27   2.5  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   4.4  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   7.6  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   7.6  

>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 706 GLRSKSKYDIRNRLHAADPPKMAPPLNKSP 795
           G  S + YD R+RLH   PP     L+  P
Sbjct: 152 GSESSAYYDSRSRLHGIQPPPKRRTLSPPP 181


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 584 NVPINGVNVHDIIGYKFDYGPVARSPRAGR 495
           N  +NG N    +G+ F Y P AR P  GR
Sbjct: 523 NGVMNG-NQRQFLGFTFKYRPNARKPLVGR 551


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 436 SSFAAMQLELKC--CGVNSNLDWYKHRS-SYPPAC 341
           S +A   + ++C  CG+  NLD+ KH S    PAC
Sbjct: 796 SGYALGDVHVQCDNCGLRVNLDFIKHISMPCVPAC 830


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 11  ILFFKFKTDQDVVRSHLVCRNRNDRGRGEGSEHRLRRFEHMSLAP 145
           +LF   KT +  +R H        + RG+ S  RLR F   SL+P
Sbjct: 149 LLFPSIKTRRLGMRGHSKYHYCGIKLRGQDSFRRLRTFSDSSLSP 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,990
Number of Sequences: 5004
Number of extensions: 68610
Number of successful extensions: 203
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)