Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b21
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939...    31   0.86 
08_02_0638 + 19603399-19604679                                         29   6.1  
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292...    29   6.1  
07_03_0604 + 19903654-19904598                                         28   8.0  
06_01_0931 + 7192519-7194075                                           28   8.0  

>11_06_0490 -
           24293218-24293373,24293454-24293521,24293845-24293986,
           24294079-24294699,24294791-24294871,24295002-24295072,
           24296106-24296176,24296568-24296675,24296786-24297024,
           24297493-24297657
          Length = 573

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 419 HGSERASDRRIDGIQHHRLRHARVQSGRLAESARQARNRT 538
           H SER  DR  DG + HR R      GR   S  ++R+R+
Sbjct: 131 HDSERRRDRDRDGHRRHRSRSRSPSKGRDRRSRSRSRSRS 170


>08_02_0638 + 19603399-19604679
          Length = 426

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
 Frame = +1

Query: 178 P*TTSPPCRRS*RMLEPTASSHSSVAE*GRDASNPSGTRENHTFPRAFH*KHVRSTPEDT 357
           P    PP R     L P  SS  S A       NPS         R F  KH  S     
Sbjct: 161 PPFAGPPARSRFDHLFPAPSSLRSAAT-AAGGGNPSSLPAY--LLRPFAQKHHPSPFPPF 217

Query: 358 SFGAYTNPS*NSLR-STSTRVAWQRKSFGPQDRWHPASSPA 477
              + ++PS +++  +TST  A       P DR+H AS+P+
Sbjct: 218 PSPSTSSPSPSNIAIATSTAAATTAAVAAPGDRYHLASAPS 258


>02_01_0401 +
           2927581-2927669,2927795-2927921,2928354-2928437,
           2928546-2928662,2928754-2928945,2929031-2929234,
           2929322-2929809,2930429-2930528,2930686-2930745,
           2931007-2931126,2931407-2931751
          Length = 641

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/85 (24%), Positives = 34/85 (40%)
 Frame = -2

Query: 451 DPAVRSSFAAMQLELKCCGVNSNLDWYKHRSSYPPACCGRASNEKRGERCDFPLYPTGCL 272
           DP  R   +  +L  K   V+ N    KHR       C      +  E+ D   +    L
Sbjct: 239 DPEERQMVSLNRLFEKHRDVSLNRLLEKHRDEEMQESCSTDKEGEEDEKIDTLSFEQSIL 298

Query: 271 RPALIQLRNYVNSLSALASAMIVCM 197
           +   ++L N  N+ + L+  M+ CM
Sbjct: 299 KITSMKLGNLWNNPNQLSEEMVRCM 323


>07_03_0604 + 19903654-19904598
          Length = 314

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +2

Query: 422 GSERASDRRIDGIQHH---RLRHARVQSGRLAESARQARNRTYTQ*YHEH*RH**GH*GS 592
           G  R   RR++G   H   RL H RV+  R+  + R +R R   +      R      G+
Sbjct: 81  GGRRRRPRRVEGAPVHRARRLHHRRVRRRRVHVAVRSSRRRHGRRGEEGQGRRPRVPAGA 140

Query: 593 Q*RNRFRVIRHKGGQ 637
           Q R R R   H  GQ
Sbjct: 141 QLRRRRRAHGHGHGQ 155


>06_01_0931 + 7192519-7194075
          Length = 518

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +1

Query: 451 RWHPASSPAPCSRSERPARGERATGP*SNLYPMIS*TL 564
           RW P+S P P S S  P+    A  P   L P IS TL
Sbjct: 7   RWRPSSPPMPSSSSSSPSSSFTADPPAEFLCP-ISGTL 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,336,339
Number of Sequences: 37544
Number of extensions: 560534
Number of successful extensions: 1919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1918
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)